BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0639900 Os07g0639900|J080305J22
         (131 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59440.3  | chr5:23971397-23972729 FORWARD LENGTH=272          137   1e-33

>AT5G59440.3 | chr5:23971397-23972729 FORWARD LENGTH=272
          Length = 271

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 78/100 (78%), Gaps = 9/100 (9%)

Query: 38  SVRMESG---------SSQGGRGALIVLEGLDRSGKSSQCARLLSFLQGKGCQAEGWRFP 88
           SVRMES          SS   RGALIVLEGLDRSGKS+QCA+LLSFL G G   E WRFP
Sbjct: 45  SVRMESSNFSSGVRTESSVKPRGALIVLEGLDRSGKSTQCAKLLSFLNGLGHPTELWRFP 104

Query: 89  DRGTSVGQMISAYLANESELDDRTIHLLFSANRWEKRFVL 128
           DR TSVGQMISAYL+N+S+LDD TIHLLFSANRWEKR ++
Sbjct: 105 DRETSVGQMISAYLSNKSQLDDHTIHLLFSANRWEKRSLM 144



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,793,166
Number of extensions: 101362
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 44
Effective length of database: 8,721,377
Effective search space: 383740588
Effective search space used: 383740588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)