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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0637100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock protein DnaJ, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0334) R2 : 0.175
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.764 (0.0856) R2dC : 0.145 R2C : 0.138
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.28 (0.0701) R2dN8 : 0.0373 R2N8 : 0.03
σ : 0.628
deviance : 180.36
__
_____
C
peak time of C : 7.75
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.5 0.593 3.31 -0.629 0.771 0.519 -0.412 -1.18 0.256 9.43 19.92 272 -- --
162.73 0.594 3.31 -0.632 0.771 0.525 0.0176 -- 0.251 9.47 19.51 279 -- --
159.92 0.589 3.31 -0.635 0.767 0.525 -- -0.991 0.259 9.5 19.5 275 -- --
162.71 0.594 3.31 -0.626 0.763 0.543 -- -- 0.252 9.58 19.5 279 -- --
177.89 0.621 3.32 -0.68 -- 0.686 -- -0.935 0.269 -- 19.11 788 -- --
168.56 0.609 3.32 -0.654 0.771 -- -0.329 -- 0.206 7.59 -- -- -- --
168.84 0.608 3.32 -0.661 0.769 -- -- -- 0.207 7.69 -- -- -- --
177.26 0.62 3.32 -0.556 -- 0.765 -- -- 0.319 -- 13.73 781 -- --
173.31 0.613 3.29 -- 0.761 0.557 -- -- 0.33 9.71 19.33 276 -- --
200.7 0.662 3.34 -0.651 -- -- -- -- 0.218 -- -- -- -- --
180.36 0.628 3.31 -- 0.764 -- -- -- 0.28 7.75 -- -- -- --
184.57 0.633 3.3 -- -- 0.839 -- -- 0.387 -- 11.51 851 -- --
211.89 0.679 3.33 -- -- -- -- -- 0.29 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.07 radiation 1 10 < th dose dependent rect. 6 6
3 155.84 radiation 20 90 < th dose independent rect. 4 8
4 155.89 radiation 1 10 < th dose independent rect. 6 6
6 156.03 radiation 20 90 < th dose independent rect. 3 22
12 157.06 radiation 30 90 < th dose dependent rect. 4 8
13 157.26 radiation 20 270 < th dose independent rect. 1 22
16 157.34 radiation 20 90 < th dose independent rect. 19 17
23 157.56 radiation 20 90 < th dose independent rect. 17 19
27 157.76 radiation 30 90 < th dose dependent rect. 3 22
31 157.89 wind 5 14400 < th dose independent rect. 12 3
33 157.95 wind 5 14400 < th dose independent rect. 11 6
37 158.01 wind 5 14400 > th dose independent rect. 12 3
40 158.01 radiation 20 270 < th dose independent rect. 14 22
43 158.03 wind 5 14400 > th dose independent rect. 11 6
62 158.17 radiation 1 90 < th dose independent rect. 10 1
65 158.17 radiation 1 90 < th dose dependent rect. 10 1
79 158.24 radiation 30 270 < th dose dependent rect. 1 22
94 158.38 radiation 10 10 < th dose dependent rect. 11 1
115 158.52 temperature 15 720 > th dose dependent rect. 3 2
124 158.58 atmosphere 1005 720 > th dose independent rect. 18 3
143 158.69 temperature 10 720 > th dose dependent rect. 24 6
146 158.71 wind 5 14400 < th dose independent sin 22 NA
181 158.86 wind 3 14400 > th dose dependent rect. 9 8
188 158.91 wind 5 14400 > th dose independent sin 21 NA
189 158.91 temperature 20 270 > th dose independent rect. 2 19
197 158.95 wind 3 14400 > th dose dependent rect. 12 3
198 158.95 temperature 10 720 > th dose dependent rect. 2 4
213 159.01 radiation 20 90 < th dose independent rect. 17 23
221 159.04 wind 3 14400 > th dose dependent rect. 11 5
250 159.11 wind 5 90 < th dose dependent rect. 3 14
251 159.11 wind 5 90 < th dose dependent rect. 4 17
255 159.12 wind 5 90 < th dose dependent rect. 3 12
258 159.13 radiation 20 270 < th dose independent rect. 10 23
266 159.17 wind 7 90 < th dose dependent rect. 3 20
283 159.21 wind 5 14400 > th dose dependent rect. 14 2
316 159.29 radiation 30 270 < th dose dependent rect. 14 22
370 159.42 wind 7 90 < th dose dependent rect. 3 10
394 159.47 atmosphere 1010 30 < th dose independent rect. 4 8
399 159.47 radiation 30 90 < th dose dependent rect. 17 19
416 159.51 radiation 20 270 < th dose independent no NA NA
423 159.52 radiation 30 90 < th dose dependent rect. 19 17
435 159.55 wind 7 14400 < th dose dependent rect. 11 4
439 159.56 radiation 20 270 < th dose independent rect. 7 23
479 159.65 temperature 10 720 > th dose dependent rect. 19 11
495 159.68 wind 3 14400 > th dose dependent sin 21 NA
546 159.77 temperature 10 270 > th dose dependent rect. 2 9
569 159.82 wind 7 14400 < th dose dependent rect. 9 9
572 159.83 temperature 20 270 > th dose independent rect. 2 9
584 159.85 temperature 10 720 > th dose dependent rect. 18 13
696 160.02 temperature 20 10 > th dose independent rect. 3 9
767 160.10 radiation 30 10 < th dose independent rect. 4 21
825 160.18 wind 3 270 < th dose dependent rect. 4 1
854 160.22 wind 3 720 < th dose independent rect. 23 6
906 160.29 radiation 20 270 < th dose independent sin 5 NA
925 160.31 radiation 10 270 < th dose independent rect. 15 17
936 160.32 atmosphere 1005 720 > th dose independent rect. 18 7
950 160.34 wind 3 90 < th dose independent rect. 3 12
954 160.34 radiation 30 270 < th dose dependent rect. 10 23
984 160.37 radiation 20 270 < th dose dependent rect. 15 18
987 160.37 wind 9 90 < th dose dependent rect. 3 22