BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0637100 Os07g0637100|AK111132
         (82 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62190.1  | chr3:23021146-23022614 FORWARD LENGTH=139           69   5e-13
AT1G59725.1  | chr1:21950738-21952210 FORWARD LENGTH=332           47   2e-06

>AT3G62190.1 | chr3:23021146-23022614 FORWARD LENGTH=139
          Length = 138

 Score = 68.9 bits (167), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 42/73 (57%)

Query: 1  MRSSEAMELLGLPAHTRPSPSEVKAAYRRMVMESHPDRVPTHQKSQAESKFKQVRYRLIS 60
          M   EA  LLG P ++RP PS+VKAAYR+ V ESHPD  P  QK  AESKFK +      
Sbjct: 1  MEVEEAKILLGFPPNSRPDPSQVKAAYRKKVWESHPDLFPDDQKLVAESKFKSISEAYSC 60

Query: 61 DHCGKLLGHHVFR 73
             G + G   +R
Sbjct: 61 LESGDVKGQWYYR 73



>AT1G59725.1 | chr1:21950738-21952210 FORWARD LENGTH=332
          Length = 331

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 15 HTRPSPSE--VKAAYRRMVMESHPDRVPTHQKSQAESKFKQVR--YRLISD 61
          +  PS +E  +K +YRR+ M+ HPD+ PT  K +AE+KFKQ+   Y ++SD
Sbjct: 10 NVNPSATEDDLKKSYRRLAMKWHPDKNPTSIKQEAEAKFKQISEAYDVLSD 60



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,717,849
Number of extensions: 54333
Number of successful extensions: 236
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 2
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)