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Os07g0636400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0285) R2 : 0.486
β1 : -1.15 (0.104) R2dD : 0.144 R2D : 0.13
β2 : 3.84 (0.243) R2dC : 3.55 R2C : -3.86
β3 : 3.82 (0.222) R2dE : 4.24 R2E : -3.24
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.12 (0.0609) R2dN8 : 0.00533 R2N8 : 0.000924
σ : 0.53
deviance : 129.53
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_____
C
peak time of C : 13.7
E
wheather : radiation
threshold : 16.31
memory length : 12
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 4.75
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
129.65 0.535 10.4 -1.16 4.18 4.19 0.672 0.527 -0.119 13.5 18.46 12 4.92 --
129.64 0.53 10.4 -1.16 4.23 4.22 0.154 -- -0.113 13.6 18.05 12 4.82 --
130.42 0.532 10.4 -1.13 4.13 4.09 -- 0.165 -0.118 13.5 18.09 13 4.95 --
129.53 0.53 10.4 -1.15 3.84 3.82 -- -- -0.12 13.7 16.31 12 4.75 --
169.19 0.606 10.4 -1.15 -- 1.03 -- 0.425 -0.227 -- 262.2 549 14.7 --
170.24 0.612 10.5 -1.15 0.904 -- 0.306 -- -0.209 20.2 -- -- -- --
170.53 0.612 10.5 -1.16 0.903 -- -- -- -0.209 20.2 -- -- -- --
169.02 0.605 10.5 -1.16 -- 1.05 -- -- -0.215 -- 155.6 567 14.9 --
164.33 0.597 10.4 -- 3.84 3.8 -- -- 0.0102 13.7 16.22 12 4.75 --
215.54 0.686 10.4 -1.17 -- -- -- -- -0.22 -- -- -- -- --
205.98 0.671 10.4 -- 0.91 -- -- -- -0.08 20.1 -- -- -- --
202.23 0.662 10.4 -- -- 1.13 -- -- -0.027 -- 98.51 545 15.1 --
251.44 0.74 10.4 -- -- -- -- -- -0.0901 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.01 temperature 10.0 10 > th dose dependent rect. 9 20
2 121.59 temperature 10.0 90 > th dose dependent rect. 9 19
4 122.63 temperature 15.0 30 > th dose dependent rect. 5 4
10 124.02 temperature 15.0 270 > th dose independent rect. 7 20
12 124.05 temperature 15.0 90 > th dose independent rect. 9 19
13 124.14 temperature 10.0 270 > th dose dependent rect. 4 3
19 125.13 radiation 1.0 30 > th dose independent rect. 5 4
39 126.06 wind 5.0 270 < th dose independent rect. 3 4
43 126.45 wind 9.0 270 < th dose dependent rect. 4 3
46 126.48 radiation 30.0 90 < th dose independent rect. 5 4
47 126.60 temperature 30.0 90 < th dose independent rect. 5 4
67 126.95 precipitation 0.1 270 < th dose independent rect. 3 4
68 126.95 precipitation 0.1 270 < th dose dependent rect. 3 4
74 127.08 precipitation 0.1 270 < th dose independent rect. 7 20
75 127.08 precipitation 0.1 270 < th dose dependent rect. 7 20
76 127.13 precipitation 0.1 90 < th dose independent rect. 9 19
77 127.13 precipitation 0.1 90 < th dose dependent rect. 9 19
78 127.19 humidity 60.0 90 > th dose independent rect. 4 5
89 127.38 temperature 10.0 270 > th dose independent rect. 3 4
94 127.38 atmosphere 995.0 270 > th dose independent rect. 3 4
95 127.38 atmosphere 1015.0 270 < th dose independent rect. 3 4
132 127.53 wind 9.0 90 < th dose independent rect. 9 19
136 127.62 atmosphere 1015.0 90 < th dose independent rect. 9 19
146 127.65 wind 9.0 270 < th dose independent rect. 7 20
172 128.03 radiation 40.0 270 < th dose dependent rect. 4 3
247 128.82 atmosphere 995.0 90 > th dose independent rect. 9 19
250 128.86 radiation 40.0 270 < th dose dependent rect. 3 5
251 128.87 radiation 1.0 10 > th dose dependent rect. 18 15
254 128.91 humidity 90.0 90 < th dose independent rect. 9 6
257 128.94 atmosphere 1015.0 270 < th dose independent rect. 7 20
264 129.06 radiation 1.0 10 > th dose dependent rect. 5 4
283 129.31 humidity 50.0 270 > th dose dependent rect. 4 3
311 130.20 temperature 15.0 90 > th dose independent rect. 9 6
320 130.37 radiation 1.0 10 > th dose dependent rect. 16 17
321 130.39 temperature 10.0 43200 > th dose independent rect. 10 6
335 130.48 radiation 20.0 10 < th dose dependent sin 11 NA
337 130.57 atmosphere 1015.0 90 < th dose dependent rect. 5 4
349 130.67 temperature 15.0 270 > th dose independent rect. 18 9
351 130.69 temperature 10.0 10 > th dose dependent rect. 20 9
360 130.95 humidity 50.0 90 > th dose independent rect. 15 18
367 131.16 precipitation 0.1 90 < th dose independent rect. 9 6
368 131.16 precipitation 0.1 90 < th dose dependent rect. 9 6
373 131.20 temperature 10.0 270 > th dose dependent rect. 19 8
385 131.48 temperature 10.0 1440 > th dose independent rect. 5 5
388 131.48 atmosphere 995.0 1440 > th dose independent rect. 5 5
389 131.48 atmosphere 1015.0 1440 < th dose independent rect. 5 5
390 131.48 temperature 10.0 1440 > th dose independent rect. 10 19
400 131.62 temperature 10.0 90 > th dose dependent rect. 9 6
402 131.64 precipitation 0.1 270 < th dose independent rect. 17 10
403 131.64 radiation 40.0 90 < th dose independent rect. 15 18
404 131.64 precipitation 0.1 270 < th dose dependent rect. 17 10
412 131.71 atmosphere 1015.0 90 < th dose independent rect. 9 6
413 131.71 temperature 10.0 90 > th dose independent rect. 15 18
414 131.73 wind 9.0 90 < th dose independent rect. 9 6
415 131.73 atmosphere 1015.0 270 < th dose dependent rect. 3 4
418 131.77 atmosphere 995.0 90 > th dose independent rect. 9 6
420 131.80 wind 9.0 90 < th dose independent rect. 15 18
421 131.80 atmosphere 1015.0 270 < th dose dependent rect. 4 2
444 132.10 radiation 1.0 270 < th dose independent rect. 18 9
450 132.18 radiation 10.0 270 < th dose dependent rect. 18 9
454 132.23 wind 9.0 270 < th dose independent rect. 18 9
455 132.23 temperature 10.0 10 > th dose dependent rect. 9 6
461 132.25 radiation 10.0 10 < th dose dependent rect. 20 10
465 132.27 humidity 50.0 270 > th dose independent rect. 18 9
469 132.27 temperature 10.0 270 > th dose independent rect. 3 15
470 132.27 atmosphere 1015.0 270 < th dose independent rect. 3 15
479 132.37 radiation 1.0 30 < th dose independent rect. 20 10
486 132.43 atmosphere 995.0 270 > th dose independent rect. 18 9
496 132.46 radiation 1.0 90 < th dose dependent sin 11 NA
526 132.72 wind 9.0 270 < th dose independent rect. 3 15
530 132.76 radiation 1.0 90 > th dose independent rect. 9 6
574 133.13 temperature 30.0 270 < th dose independent rect. 18 9
599 133.27 precipitation 0.1 270 < th dose independent rect. 3 14
601 133.27 precipitation 0.1 270 < th dose dependent rect. 3 14
613 133.35 temperature 10.0 1440 > th dose independent rect. 10 6
620 133.35 temperature 10.0 1440 > th dose independent rect. 16 18
644 133.47 temperature 15.0 90 > th dose independent rect. 20 9
647 133.49 wind 9.0 90 < th dose dependent rect. 9 19
662 133.63 wind 9.0 10 < th dose independent rect. 9 6
678 133.70 radiation 1.0 30 < th dose dependent rect. 20 18
685 133.77 wind 1.0 90 > th dose independent rect. 9 6
715 133.91 radiation 1.0 10 > th dose independent rect. 9 6
721 133.96 wind 1.0 30 > th dose independent rect. 5 4
743 134.15 radiation 1.0 90 < th dose independent sin 11 NA
780 134.27 precipitation 0.1 90 < th dose independent rect. 15 18
781 134.27 precipitation 0.1 90 < th dose dependent rect. 15 18
786 134.31 radiation 1.0 90 > th dose independent sin 11 NA
799 134.41 atmosphere 995.0 90 > th dose independent rect. 15 18
903 134.83 temperature 10.0 1440 > th dose independent rect. 7 3
906 134.83 atmosphere 995.0 1440 > th dose independent rect. 7 3
908 134.83 atmosphere 1015.0 1440 < th dose independent rect. 7 3
909 134.83 temperature 10.0 1440 > th dose independent rect. 10 21
933 134.96 radiation 1.0 30 < th dose independent rect. 20 18
944 134.99 atmosphere 1015.0 270 < th dose independent rect. 18 9
995 135.17 radiation 40.0 10 < th dose independent rect. 5 15