BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0636400 Os07g0636400|AK100630
         (189 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01790.1  | chr4:769868-770728 FORWARD LENGTH=168              121   2e-28

>AT4G01790.1 | chr4:769868-770728 FORWARD LENGTH=168
          Length = 167

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 16/156 (10%)

Query: 25  SDYIGGDALDDLLSKLIKSVEVAKASR-EGLPEKIWMKRQFAVGVNDVTRVLERMPXXXX 83
           SDY  G+ L  LL  + + +E +K S    LPEKIW+K+Q A+G+N+VTRVLERM     
Sbjct: 23  SDYYEGERLTHLLDLIQRGIETSKLSNVNSLPEKIWLKKQIAIGINEVTRVLERMNPNNT 82

Query: 84  XXXXXXXXXXXITDKALCRXXXXXXXXXXXXXDCNPKWLTKHIPTLASTRQVPVLCLKDN 143
                      +                    DC P+ LTKHIP LA++R VPVL ++DN
Sbjct: 83  SDQQQNPKQLQVV---------------ILVADCKPRMLTKHIPNLAASRNVPVLYVRDN 127

Query: 144 KESSLRLGQVVNVRTALAIGVKARDSIINKAIDEVL 179
           K +SLRLG++V ++TALAIG+KAR + +N  + ++L
Sbjct: 128 KRASLRLGELVKLKTALAIGIKARGNDLNLLLKQIL 163



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,044,040
Number of extensions: 92392
Number of successful extensions: 228
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 96
Effective length of database: 8,556,881
Effective search space: 821460576
Effective search space used: 821460576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)