Os07g0632800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os07g0632800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.57 | 0.197 | 11.5 | -0.291 | 0.35 | -0.465 | -1.12 | -0.051 | 0.0706 | 12.8 | 26.3 | 682 | -- | -- |
| 17.43 | 0.194 | 11.5 | -0.285 | 0.384 | -0.459 | -1.1 | -- | 0.0716 | 13 | 26.3 | 607 | -- | -- |
| 22.29 | 0.22 | 11.5 | -0.293 | 0.379 | -0.442 | -- | 0.164 | 0.0955 | 12.6 | 25.88 | 603 | -- | -- |
| 21.62 | 0.217 | 11.5 | -0.36 | 0.511 | -0.425 | -- | -- | 0.0636 | 13 | 26.39 | 388 | -- | -- |
| 27.2 | 0.243 | 11.4 | -0.0138 | -- | -0.681 | -- | 1.04 | 0.231 | -- | 25.74 | 827 | -- | -- |
| 24.81 | 0.234 | 11.5 | -0.428 | 0.495 | -- | -0.916 | -- | -0.0472 | 11.1 | -- | -- | -- | -- |
| 28.16 | 0.249 | 11.5 | -0.467 | 0.506 | -- | -- | -- | -0.052 | 10.6 | -- | -- | -- | -- |
| 29.77 | 0.254 | 11.5 | -0.146 | -- | -0.736 | -- | -- | 0.185 | -- | 25.6 | 858 | -- | -- |
| 24.53 | 0.231 | 11.5 | -- | 0.502 | -0.481 | -- | -- | 0.109 | 13.3 | 26.3 | 421 | -- | -- |
| 43.92 | 0.31 | 11.5 | -0.476 | -- | -- | -- | -- | -0.0544 | -- | -- | -- | -- | -- |
| 33.91 | 0.272 | 11.5 | -- | 0.509 | -- | -- | -- | 7.89e-06 | 10.7 | -- | -- | -- | -- |
| 30.52 | 0.257 | 11.5 | -- | -- | -0.676 | -- | -- | 0.176 | -- | 25.8 | 821 | -- | -- |
| 49.9 | 0.33 | 11.5 | -- | -- | -- | -- | -- | -0.00155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 15 | 17.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 13 |
| 16 | 17.06 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 20 |
| 24 | 17.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 37 | 17.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 44 | 17.30 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 13 |
| 53 | 17.32 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 82 | 17.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 123 | 17.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 124 | 17.56 | temperature | 15 | 720 | > th | dose dependent | sin | 1 | NA |
| 143 | 17.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 148 | 17.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 150 | 17.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 152 | 17.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 10 |
| 165 | 17.62 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 170 | 17.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 14 |
| 179 | 17.64 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 21 |
| 231 | 17.72 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 20 |
| 232 | 17.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 248 | 17.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 322 | 17.80 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 352 | 17.83 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 365 | 17.85 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 4 |
| 481 | 17.95 | temperature | 25 | 720 | > th | dose independent | sin | 0 | NA |
| 498 | 17.96 | temperature | 25 | 270 | > th | dose independent | sin | 22 | NA |
| 518 | 17.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 593 | 18.03 | temperature | 15 | 90 | > th | dose dependent | sin | 22 | NA |
| 682 | 18.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 12 |
| 737 | 18.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 792 | 18.17 | temperature | 25 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 793 | 18.17 | temperature | 25 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 810 | 18.18 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 815 | 18.18 | temperature | 25 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 816 | 18.18 | temperature | 20 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 855 | 18.20 | temperature | 20 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 870 | 18.21 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 892 | 18.22 | temperature | 25 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 894 | 18.22 | temperature | 25 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 901 | 18.22 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 927 | 18.22 | temperature | 20 | 43200 | > th | dose dependent | rect. | 17 | 17 |
| 947 | 18.23 | temperature | 25 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 956 | 18.23 | temperature | 15 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 981 | 18.23 | temperature | 20 | 43200 | > th | dose dependent | rect. | 19 | 15 |