BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0632800 Os07g0632800|J065178P18
(55 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14000.1 | chr1:4797606-4800043 FORWARD LENGTH=439 80 2e-16
AT3G58760.1 | chr3:21728756-21731740 FORWARD LENGTH=472 58 1e-09
AT4G18950.1 | chr4:10375685-10378129 FORWARD LENGTH=460 57 1e-09
AT2G31800.1 | chr2:13520605-13523646 REVERSE LENGTH=477 55 5e-09
AT2G43850.1 | chr2:18159517-18161984 REVERSE LENGTH=480 55 1e-08
AT1G08720.1 | chr1:2774089-2779077 FORWARD LENGTH=934 50 2e-07
AT3G59830.1 | chr3:22103006-22105323 REVERSE LENGTH=478 50 2e-07
AT1G73660.1 | chr1:27692247-27696718 REVERSE LENGTH=1031 50 2e-07
AT1G18160.1 | chr1:6249126-6253835 FORWARD LENGTH=993 49 4e-07
AT5G49470.2 | chr5:20063616-20068311 FORWARD LENGTH=832 49 6e-07
AT3G06640.1 | chr3:2074491-2078317 REVERSE LENGTH=731 49 8e-07
AT1G67890.1 | chr1:25457345-25462436 FORWARD LENGTH=766 48 1e-06
AT5G11850.1 | chr5:3816632-3821024 REVERSE LENGTH=881 48 1e-06
AT3G06620.1 | chr3:2062833-2067138 REVERSE LENGTH=774 47 1e-06
AT3G58640.1 | chr3:21687153-21692675 REVERSE LENGTH=810 47 3e-06
>AT1G14000.1 | chr1:4797606-4800043 FORWARD LENGTH=439
Length = 438
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/40 (85%), Positives = 39/40 (97%)
Query: 11 QDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFLRG 50
QDF+HEV+LL+KLRHPNIVQFLGAVTE KPLML+TE+LRG
Sbjct: 203 QDFRHEVDLLVKLRHPNIVQFLGAVTERKPLMLITEYLRG 242
>AT3G58760.1 | chr3:21728756-21731740 FORWARD LENGTH=472
Length = 471
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 13 FKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFL 48
F+ E+ LL K+RHPN+VQFLGAVT++ P+M+VTE+L
Sbjct: 206 FRDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYL 241
>AT4G18950.1 | chr4:10375685-10378129 FORWARD LENGTH=460
Length = 459
Score = 57.4 bits (137), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/41 (63%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Query: 11 QDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFL-RG 50
+ F E+ LL +LRHPNIVQFLGAVT++ P+M+VTE+L RG
Sbjct: 198 RKFHDELALLQRLRHPNIVQFLGAVTQSNPMMIVTEYLPRG 238
>AT2G31800.1 | chr2:13520605-13523646 REVERSE LENGTH=477
Length = 476
Score = 55.5 bits (132), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 30/35 (85%)
Query: 13 FKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEF 47
FKHE+ L K+RHPN+VQF+GAVT+ P+M+V+E+
Sbjct: 235 FKHELTLFEKVRHPNVVQFVGAVTQNVPMMIVSEY 269
>AT2G43850.1 | chr2:18159517-18161984 REVERSE LENGTH=480
Length = 479
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 30/35 (85%)
Query: 13 FKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEF 47
F+HE+ LL K+RHPN++QF+GAVT+ P+M+V E+
Sbjct: 238 FRHELTLLEKVRHPNVIQFVGAVTQNIPMMIVVEY 272
>AT1G08720.1 | chr1:2774089-2779077 FORWARD LENGTH=934
Length = 933
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 5 FFGVCRQDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFL-RG--VRIL 54
F G +F+ EV ++ +LRHPN+V FLGAVT L +VTEFL RG RIL
Sbjct: 703 FSGAALAEFRSEVRIMRRLRHPNVVFFLGAVTRPPNLSIVTEFLPRGSLYRIL 755
>AT3G59830.1 | chr3:22103006-22105323 REVERSE LENGTH=478
Length = 477
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 13 FKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTE 46
F +E+ LL K RHPNIVQF+GAVT+ P+M+V E
Sbjct: 236 FTNELTLLAKARHPNIVQFVGAVTQNLPMMIVVE 269
>AT1G73660.1 | chr1:27692247-27696718 REVERSE LENGTH=1031
Length = 1030
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 7 GVCRQDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFL-RG 50
G ++F+ EV ++ KLRHPNIV F+GAVT L +VTEFL RG
Sbjct: 784 GEALEEFRSEVRIMKKLRHPNIVLFMGAVTRPPNLSIVTEFLPRG 828
>AT1G18160.1 | chr1:6249126-6253835 FORWARD LENGTH=993
Length = 992
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 7 GVCRQDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFL-RG 50
G ++F+ EV ++ +LRHPNIV F+GAVT L +VTEFL RG
Sbjct: 751 GEALEEFRSEVRMMRRLRHPNIVLFMGAVTRPPNLSIVTEFLPRG 795
>AT5G49470.2 | chr5:20063616-20068311 FORWARD LENGTH=832
Length = 831
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 13 FKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFL 48
F+ EV+L+ +LRHPN++ F+GAVT + L +VTEFL
Sbjct: 530 FRQEVSLMKRLRHPNVLLFMGAVTSPQRLCIVTEFL 565
>AT3G06640.1 | chr3:2074491-2078317 REVERSE LENGTH=731
Length = 730
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Query: 11 QDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFL-RG 50
Q F+ EV+L+ +LRHPN++ F+GAVT + L +V+EFL RG
Sbjct: 486 QSFRQEVSLMQRLRHPNVLLFMGAVTLPQGLCIVSEFLPRG 526
>AT1G67890.1 | chr1:25457345-25462436 FORWARD LENGTH=766
Length = 765
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Query: 13 FKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFL-RG 50
FK EV+L+ +LRHPN++ F+GAV + L +VTEFL RG
Sbjct: 529 FKQEVSLMKRLRHPNVLLFMGAVASPQRLCIVTEFLPRG 567
>AT5G11850.1 | chr5:3816632-3821024 REVERSE LENGTH=881
Length = 880
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 5 FFGVCRQDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFL-RG 50
F G FK E+ ++++LRHPN+V F+GAVT ++TEFL RG
Sbjct: 643 FSGDALTQFKSEIEIMLRLRHPNVVLFMGAVTRPPNFSILTEFLPRG 689
>AT3G06620.1 | chr3:2062833-2067138 REVERSE LENGTH=774
Length = 773
Score = 47.4 bits (111), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 11 QDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFL-RG 50
+ FK EV L+ +LRHPN++ F+GAVT + L +V+EFL RG
Sbjct: 534 ESFKQEVLLMKRLRHPNVLLFMGAVTSPQRLCIVSEFLPRG 574
>AT3G58640.1 | chr3:21687153-21692675 REVERSE LENGTH=810
Length = 809
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 30/38 (78%)
Query: 11 QDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFL 48
+DF +E+++L +LRHPN++ FLGA T+ L L+TE++
Sbjct: 593 EDFCNEISILSRLRHPNVILFLGACTKPPRLSLITEYM 630
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.336 0.151 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,024,294
Number of extensions: 26341
Number of successful extensions: 715
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 15
Length of query: 55
Length of database: 11,106,569
Length adjustment: 28
Effective length of query: 27
Effective length of database: 10,338,921
Effective search space: 279150867
Effective search space used: 279150867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 104 (44.7 bits)