Os07g0626900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os07g0626900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.78 | 0.401 | 8.64 | -0.0303 | 0.646 | 0.513 | -0.298 | 1.56 | 0.0498 | 8.33 | 29.9 | 4366 | -- | -- |
| 73.48 | 0.399 | 8.66 | -0.254 | 0.679 | 0.676 | -0.0824 | -- | 0.0372 | 8.12 | 29.87 | 4367 | -- | -- |
| 73.05 | 0.398 | 8.64 | -0.0347 | 0.647 | 0.513 | -- | 1.58 | 0.05 | 8.4 | 29.9 | 4366 | -- | -- |
| 73.39 | 0.399 | 8.67 | -0.316 | 0.664 | 0.674 | -- | -- | 0.0248 | 8.33 | 29.9 | 4476 | -- | -- |
| 96.21 | 0.457 | 8.64 | 0.0859 | -- | 0.427 | -- | 2.18 | 0.0647 | -- | 29.86 | 4336 | -- | -- |
| 89.98 | 0.445 | 8.69 | -0.129 | 0.64 | -- | -0.351 | -- | -0.0589 | 8.05 | -- | -- | -- | -- |
| 90.34 | 0.445 | 8.69 | -0.138 | 0.64 | -- | -- | -- | -0.0583 | 8.12 | -- | -- | -- | -- |
| 94.68 | 0.453 | 8.7 | -0.331 | -- | 0.594 | -- | -- | -0.00727 | -- | 29.8 | 5808 | -- | -- |
| 75.89 | 0.406 | 8.66 | -- | 0.678 | 0.595 | -- | -- | 0.0606 | 8.32 | 29.9 | 4956 | -- | -- |
| 112.83 | 0.496 | 8.71 | -0.133 | -- | -- | -- | -- | -0.0506 | -- | -- | -- | -- | -- |
| 90.84 | 0.446 | 8.69 | -- | 0.639 | -- | -- | -- | -0.0429 | 8.14 | -- | -- | -- | -- |
| 97.41 | 0.46 | 8.69 | -- | -- | 0.551 | -- | -- | 0.00899 | -- | 29.9 | 5808 | -- | -- |
| 113.3 | 0.497 | 8.7 | -- | -- | -- | -- | -- | -0.0359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.13 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 7 | 71.05 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 8 | 71.12 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 20 | 71.61 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 33 | 71.91 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 36 | 71.97 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 38 | 71.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 40 | 72.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 58 | 72.10 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 61 | 72.13 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 64 | 72.17 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 24 | 12 |
| 65 | 72.17 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 66 | 72.18 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 69 | 72.19 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 74 | 72.20 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 75 | 72.20 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 80 | 72.23 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 102 | 72.30 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 17 | 19 |
| 103 | 72.30 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 122 | 72.45 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 135 | 72.48 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 159 | 72.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 162 | 72.51 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 178 | 72.52 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 234 | 72.59 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 240 | 72.61 | temperature | 30.0 | 4320 | > th | dose dependent | sin | 7 | NA |
| 247 | 72.63 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 252 | 72.64 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 256 | 72.65 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 7 |
| 260 | 72.65 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 263 | 72.65 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 302 | 72.69 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 7 | 11 |
| 303 | 72.69 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 425 | 72.83 | temperature | 30.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 434 | 72.84 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 15 |
| 436 | 72.84 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 19 |
| 442 | 72.85 | temperature | 30.0 | 4320 | > th | dose independent | sin | 23 | NA |
| 472 | 72.85 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 475 | 72.86 | temperature | 30.0 | 4320 | < th | dose independent | sin | 21 | NA |
| 515 | 72.87 | temperature | 30.0 | 4320 | > th | dose independent | sin | 9 | NA |
| 608 | 72.90 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 7 | 23 |
| 613 | 72.91 | temperature | 30.0 | 4320 | > th | dose independent | no | NA | NA |
| 615 | 72.91 | temperature | 30.0 | 4320 | < th | dose independent | no | NA | NA |
| 824 | 72.95 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 23 |