BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0626900 Os07g0626900|AK063254
         (259 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22010.2  | chr2:9363946-9368828 REVERSE LENGTH=1284           276   6e-75

>AT2G22010.2 | chr2:9363946-9368828 REVERSE LENGTH=1284
          Length = 1283

 Score =  276 bits (707), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 138/252 (54%), Positives = 175/252 (69%), Gaps = 7/252 (2%)

Query: 1    MTESSMSIREMQEKRQVADLQQRKCSVIFDISCSLARILEFFTREIPHAFLMGPDMNLRR 60
            +TE S+S+REMQEK QV + QQRKC VIF++S +LAR+LEF T  +P AFL G D NLRR
Sbjct: 1015 ITEFSVSVREMQEKYQVMEFQQRKCCVIFELSSNLARVLEFCTYAMPQAFLAGTDTNLRR 1074

Query: 61   LAELVVFILNHIILAADAEFFDM---TLRRPGQHQEKTNCTMILAPLVGIILNLMESSST 117
            L EL++FILNH+  A D EFFD+   +LRR GQ  EK +  ++LAPLVGIILNL+E+S  
Sbjct: 1075 LTELILFILNHMTSAVDDEFFDLSVRSLRRQGQPSEKVSRGILLAPLVGIILNLLEASED 1134

Query: 118  SGHRELNDVITVFTSMDCPATIHFGLQYLLSYNWSNVLRG-DASLAKLAQLEEF-SHYFM 175
            S  ++ +DVI +F SMDCP T+++G QYLL YNW   + G DA + KL QLE F SH   
Sbjct: 1135 SKPKQQHDVIGLFASMDCPDTVYYGFQYLLEYNWDGCVSGDDAYVKKLGQLENFLSHLIN 1194

Query: 176  HITMSADGNEEQGFS--TASNEEDNCCICYNSDSDTTFEPCHHRSCYGCITRHLLNSQRC 233
              +      +E+ F+  T   E++ CCICY  +++    PC HRSCYGCITRHLLN QRC
Sbjct: 1195 RASSQEPERKEESFNKDTTDIEDNTCCICYAGEANAMIAPCSHRSCYGCITRHLLNCQRC 1254

Query: 234  FFCNAVVTSVTR 245
            FFCNA V  V R
Sbjct: 1255 FFCNATVIDVIR 1266



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,262,683
Number of extensions: 209308
Number of successful extensions: 827
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 832
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)