Os07g0626600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Embryogenic callus protein-like.
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Os07g0626600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Embryogenic callus protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.59 | 0.218 | 10.8 | -0.19 | 0.577 | 0.438 | -0.367 | 0.361 | -0.278 | 9.49 | 15.98 | 615 | -- | -- |
| 21.68 | 0.217 | 10.8 | -0.244 | 0.585 | 0.44 | -0.451 | -- | -0.293 | 9.39 | 16.37 | 587 | -- | -- |
| 21.98 | 0.218 | 10.8 | -0.15 | 0.589 | 0.426 | -- | 0.668 | -0.266 | 9.53 | 16.94 | 670 | -- | -- |
| 22.27 | 0.22 | 10.8 | -0.273 | 0.593 | 0.417 | -- | -- | -0.297 | 9.37 | 18.9 | 598 | -- | -- |
| 33.61 | 0.271 | 10.8 | -0.304 | -- | 0.534 | -- | -0.229 | -0.314 | -- | 16.94 | 670 | -- | -- |
| 24.4 | 0.232 | 10.8 | -0.141 | 0.473 | -- | -0.463 | -- | -0.224 | 9.92 | -- | -- | -- | -- |
| 25.23 | 0.235 | 10.8 | -0.158 | 0.475 | -- | -- | -- | -0.225 | 9.97 | -- | -- | -- | -- |
| 33.66 | 0.271 | 10.8 | -0.268 | -- | 0.527 | -- | -- | -0.304 | -- | 16.94 | 670 | -- | -- |
| 23.94 | 0.228 | 10.8 | -- | 0.561 | 0.32 | -- | -- | -0.256 | 9.47 | 19.7 | 588 | -- | -- |
| 38.79 | 0.291 | 10.8 | -0.164 | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
| 25.9 | 0.238 | 10.8 | -- | 0.476 | -- | -- | -- | -0.207 | 9.99 | -- | -- | -- | -- |
| 35.46 | 0.278 | 10.8 | -- | -- | 0.455 | -- | -- | -0.265 | -- | 16.94 | 670 | -- | -- |
| 39.5 | 0.293 | 10.8 | -- | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.00 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 16 |
| 4 | 20.16 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 8 | 20.30 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 9 | 20.34 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 10 | 20.35 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 28 | 20.63 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 29 | 20.63 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 30 | 20.63 | temperature | 25.0 | 10 | > th | dose independent | rect. | 17 | 16 |
| 31 | 20.64 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 32 | 20.64 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 43 | 20.66 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 50 | 20.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 56 | 20.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 66 | 20.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 92 | 20.75 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 108 | 20.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 109 | 20.80 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 176 | 20.93 | temperature | 25.0 | 10 | > th | dose independent | rect. | 24 | 9 |
| 191 | 20.96 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 199 | 20.97 | temperature | 25.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 216 | 21.00 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 217 | 21.01 | temperature | 25.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 224 | 21.01 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 250 | 21.04 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 4 |
| 252 | 21.04 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 289 | 21.07 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 292 | 21.08 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 349 | 21.12 | temperature | 25.0 | 10 | > th | dose independent | rect. | 23 | 12 |
| 387 | 21.15 | temperature | 20.0 | 10 | > th | dose dependent | sin | 11 | NA |
| 388 | 21.15 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 438 | 21.18 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 439 | 21.18 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 440 | 21.18 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 452 | 21.18 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 463 | 21.19 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 492 | 21.20 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 497 | 21.21 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 548 | 21.23 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 556 | 21.23 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 558 | 21.23 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 607 | 21.25 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 11 |
| 623 | 21.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 10 |
| 652 | 21.27 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 724 | 21.30 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 773 | 21.32 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 787 | 21.32 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 808 | 21.33 | temperature | 20.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 809 | 21.33 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 811 | 21.33 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 836 | 21.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 863 | 21.34 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 21 |