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Os07g0626200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA-binding SAP domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.82 (0.0255) R2 : 0.71
β1 : 3.12 (0.0934) R2dD : 0.735 R2D : 0.691
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.26 (0.0544) R2dN8 : 0.0195 R2N8 : -0.025
σ : 0.479
deviance : 104.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.25 0.416 7.07 1.07 0.526 1.12 0.274 -9.41 0.133 3.19 30 1404 -- --
80.47 0.418 6.91 2.01 0.514 1.01 0.107 -- -0.127 2.97 19.34 34858 -- --
78.48 0.413 7.07 1.08 0.526 1.11 -- -9.33 0.133 3.14 30 1407 -- --
80.42 0.418 6.91 2.02 0.513 0.98 -- -- -0.126 2.95 19.51 34861 -- --
94.02 0.452 7.06 1.09 -- 1.17 -- -9.27 0.157 -- 30.05 1403 -- --
89.15 0.443 6.83 3.1 0.52 -- 0.155 -- 0.248 2.88 -- -- -- --
89.23 0.442 6.83 3.1 0.52 -- -- -- 0.247 2.85 -- -- -- --
95.11 0.454 6.92 1.97 -- 1.02 -- -- -0.147 -- 19.58 47520 -- --
102.99 0.473 7.04 -- 0.49 2.42 -- -- -0.692 2.99 18.7 47520 -- --
104.87 0.479 6.82 3.12 -- -- -- -- 0.26 -- -- -- -- --
342.11 0.865 6.9 -- 0.581 -- -- -- -0.098 2.89 -- -- -- --
116.76 0.503 7.04 -- -- 2.45 -- -- -0.69 -- 18.68 47520 -- --
361.6 0.888 6.9 -- -- -- -- -- -0.0858 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.92 temperature 30.0 1440 > th dose independent rect. 13 1
5 75.55 temperature 30.0 1440 < th dose independent rect. 13 1
6 75.57 temperature 30.0 1440 < th dose independent rect. 11 3
11 76.13 wind 9.0 14400 > th dose independent rect. 23 14
13 76.18 temperature 25.0 1440 > th dose dependent rect. 21 12
15 76.21 wind 9.0 14400 > th dose independent rect. 3 10
18 76.31 wind 7.0 14400 > th dose dependent rect. 3 9
41 76.39 wind 7.0 14400 < th dose independent rect. 24 12
43 76.42 radiation 1.0 14400 < th dose independent rect. 9 1
44 76.43 temperature 15.0 14400 < th dose independent rect. 22 14
46 76.44 temperature 15.0 14400 < th dose independent rect. 24 12
47 76.44 wind 7.0 14400 > th dose dependent rect. 24 12
52 76.47 temperature 25.0 1440 > th dose dependent rect. 24 9
68 76.49 wind 7.0 14400 < th dose independent rect. 3 9
70 76.50 radiation 1.0 14400 > th dose independent rect. 9 1
71 76.50 temperature 15.0 14400 > th dose independent rect. 23 2
72 76.52 temperature 15.0 14400 > th dose independent rect. 5 8
78 76.54 temperature 30.0 1440 < th dose independent rect. 4 10
84 76.59 temperature 15.0 14400 < th dose independent rect. 4 8
86 76.59 temperature 30.0 1440 < th dose independent rect. 2 12
87 76.59 temperature 15.0 14400 > th dose independent rect. 21 16
94 76.60 wind 1.0 43200 < th dose dependent rect. 23 5
95 76.61 radiation 20.0 14400 > th dose independent rect. 6 1
116 76.63 temperature 15.0 14400 < th dose independent rect. 9 1
120 76.64 temperature 15.0 14400 < th dose independent rect. 22 6
124 76.65 temperature 15.0 14400 > th dose independent rect. 9 1
137 76.71 temperature 15.0 14400 < th dose independent rect. 23 4
149 76.73 temperature 25.0 1440 > th dose dependent rect. 7 2
150 76.74 temperature 15.0 14400 < th dose independent sin 5 NA
156 76.74 temperature 30.0 1440 < th dose independent rect. 20 18
158 76.75 temperature 15.0 14400 < th dose independent rect. 23 2
170 76.76 wind 9.0 14400 > th dose dependent sin 5 NA
192 76.83 temperature 15.0 14400 < th dose independent rect. 2 1
202 76.84 temperature 15.0 14400 > th dose independent rect. 24 13
266 76.98 wind 5.0 14400 > th dose dependent rect. 18 1
278 77.00 wind 1.0 14400 < th dose dependent rect. 2 4
290 77.03 temperature 20.0 14400 < th dose dependent rect. 6 9
292 77.04 humidity 70.0 43200 < th dose independent rect. 21 12
308 77.08 wind 9.0 14400 > th dose independent rect. 11 1
316 77.08 temperature 20.0 14400 < th dose dependent rect. 11 2
358 77.15 temperature 15.0 14400 > th dose independent sin 3 NA
363 77.15 wind 7.0 14400 > th dose dependent rect. 11 1
391 77.21 wind 9.0 14400 > th dose independent rect. 9 4
454 77.29 wind 9.0 14400 > th dose dependent rect. 9 5
482 77.33 temperature 15.0 14400 > th dose independent rect. 9 21
509 77.36 wind 1.0 43200 < th dose dependent rect. 19 11
521 77.39 wind 7.0 14400 < th dose independent rect. 18 1
526 77.39 temperature 15.0 14400 < th dose independent rect. 9 21
558 77.43 wind 9.0 14400 > th dose independent sin 6 NA
570 77.45 temperature 30.0 1440 > th dose independent sin 4 NA
571 77.45 wind 7.0 14400 > th dose independent rect. 18 1
604 77.48 temperature 15.0 14400 < th dose independent rect. 5 2
624 77.51 temperature 15.0 14400 > th dose independent no NA NA
631 77.52 temperature 15.0 14400 > th dose independent rect. 6 5
641 77.52 temperature 15.0 14400 > th dose independent rect. 4 23
643 77.52 wind 1.0 43200 < th dose dependent sin 13 NA
656 77.54 temperature 20.0 14400 < th dose dependent rect. 13 1
677 77.57 temperature 15.0 14400 > th dose independent rect. 24 23
687 77.59 temperature 15.0 14400 > th dose independent rect. 2 23
690 77.59 humidity 70.0 43200 < th dose dependent rect. 24 10
695 77.61 wind 9.0 14400 > th dose independent rect. 16 2
701 77.61 wind 1.0 43200 < th dose dependent rect. 16 14
715 77.64 temperature 15.0 14400 < th dose independent no NA NA
732 77.65 wind 9.0 14400 > th dose dependent rect. 21 20
773 77.71 radiation 1.0 14400 < th dose dependent rect. 19 10
800 77.76 temperature 30.0 1440 < th dose independent sin 5 NA
801 77.76 precipitation 0.1 43200 > th dose independent rect. 8 1
802 77.76 wind 1.0 43200 < th dose independent rect. 22 6
806 77.76 precipitation 0.1 43200 > th dose dependent rect. 8 1
826 77.80 humidity 70.0 43200 < th dose independent rect. 7 2
828 77.80 wind 9.0 14400 < th dose independent rect. 8 5
832 77.80 humidity 90.0 14400 > th dose dependent rect. 2 4
838 77.82 wind 9.0 14400 < th dose independent rect. 11 1
846 77.83 temperature 25.0 1440 > th dose independent rect. 7 2
853 77.83 humidity 90.0 14400 > th dose dependent rect. 2 2
873 77.85 radiation 1.0 14400 < th dose dependent rect. 23 6
890 77.87 temperature 15.0 14400 < th dose independent rect. 4 23
931 77.93 temperature 25.0 1440 < th dose independent rect. 7 2