BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0626200 Os07g0626200|AK069686
         (792 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39680.1  | chr4:18414604-18416938 REVERSE LENGTH=634          208   1e-53

>AT4G39680.1 | chr4:18414604-18416938 REVERSE LENGTH=634
          Length = 633

 Score =  208 bits (529), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/237 (53%), Positives = 153/237 (64%), Gaps = 20/237 (8%)

Query: 449 SSGDESMEEDVMETKHVDSNTKPDYLEGKNDVTLEHVVKEVILLDT-VTEGSSVDQKEAI 507
           SSGDESME D  ETK  +S T  D         +E + KE    D    +G S + K   
Sbjct: 319 SSGDESME-DEPETKQSESITSDD-----KSAKIEMLSKEESRADMDAGKGKSPENKS-- 370

Query: 508 SQEKPVMPTEKRK--AEDQEVVANNEPIKRQRLWNVDDVKPEQATSKLSGSDASKVVHPP 565
               P++ ++KRK  A DQE V NNEP KR+R WN + +K  +A  +++ S A+    P 
Sbjct: 371 ---HPLVASDKRKLPANDQEAVGNNEPAKRRR-WNSNSIKVPEA--QITNS-ATPTTTPR 423

Query: 566 AR--RRSFGRSDSTARGNSPKERMVPPPQKPATTSLRIDRFVRPFTLKAVQELLGKTGSV 623
           +   +R F RSDS+   + PKER+VPP  K  T SLRIDRF+RPFTLKAVQELLGKTG+V
Sbjct: 424 STGLKRDFSRSDSSVSEDGPKERVVPPSPKEPTNSLRIDRFLRPFTLKAVQELLGKTGNV 483

Query: 624 CSFWMDPIKTHCYVTFSSVEEALATRNAVYNLQWPPNNGSSLVAEFVDPHEVKAKLE 680
            SFWMD IKTHCYV++ SVEEA ATR AVYNLQWPPN G  L+AEFV   EVK KLE
Sbjct: 484 TSFWMDHIKTHCYVSYPSVEEAAATREAVYNLQWPPNGGRHLIAEFVRAEEVKEKLE 540




 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 42/48 (87%)

Query: 2  STCPVLNDRPIDEWKVTELKDELRRRDLSIKGLKDDLVKRLAEALQGE 49
          S  PVL++RPID+WKVTELK+EL+RR L+ +GLK++LV+RL EAL+ E
Sbjct: 4  SPFPVLDNRPIDKWKVTELKEELKRRRLTTRGLKEELVRRLDEALRAE 51



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.305    0.125    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,724,372
Number of extensions: 751403
Number of successful extensions: 2534
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2514
Number of HSP's successfully gapped: 18
Length of query: 792
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 686
Effective length of database: 8,200,473
Effective search space: 5625524478
Effective search space used: 5625524478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 116 (49.3 bits)