Os07g0623400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription initiation Spt4 family protein.
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Os07g0623400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription initiation Spt4 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.27 | 0.231 | 10.9 | 0.217 | 0.0376 | 0.825 | 0.465 | 0.651 | 0.0801 | 12.8 | 30.15 | 267 | -- | -- |
| 24.64 | 0.231 | 10.9 | 0.325 | 0.0309 | 0.843 | 0.389 | -- | 0.0886 | 12.3 | 31.12 | 274 | -- | -- |
| 24.97 | 0.233 | 10.9 | 0.262 | 0.0583 | 0.767 | -- | 0.398 | 0.0878 | 7.98 | 29.65 | 279 | -- | -- |
| 25.11 | 0.233 | 10.9 | 0.328 | 0.0568 | 0.777 | -- | -- | 0.093 | 8.5 | 30.68 | 259 | -- | -- |
| 25.1 | 0.233 | 10.9 | 0.272 | -- | 0.807 | -- | 0.408 | 0.0873 | -- | 30.33 | 294 | -- | -- |
| 32.76 | 0.268 | 10.9 | 0.143 | 0.277 | -- | -0.0168 | -- | -0.0491 | 5.19 | -- | -- | -- | -- |
| 32.76 | 0.268 | 10.9 | 0.143 | 0.277 | -- | -- | -- | -0.049 | 5.21 | -- | -- | -- | -- |
| 25.27 | 0.234 | 10.9 | 0.341 | -- | 0.806 | -- | -- | 0.0975 | -- | 31.01 | 280 | -- | -- |
| 27.71 | 0.245 | 10.9 | -- | 0.097 | 0.643 | -- | -- | 0.0272 | 6.48 | 31.19 | 263 | -- | -- |
| 36.78 | 0.283 | 10.9 | 0.153 | -- | -- | -- | -- | -0.0421 | -- | -- | -- | -- | -- |
| 33.3 | 0.27 | 10.9 | -- | 0.28 | -- | -- | -- | -0.065 | 5.19 | -- | -- | -- | -- |
| 28.07 | 0.247 | 10.9 | -- | -- | 0.712 | -- | -- | 0.0427 | -- | 31.43 | 284 | -- | -- |
| 37.4 | 0.285 | 10.9 | -- | -- | -- | -- | -- | -0.059 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.68 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 2 | 23.74 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 4 | 23.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 6 | 23.91 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 19 | 24.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 26 | 24.27 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 31 | 24.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 36 | 24.35 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 50 | 24.49 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 53 | 24.50 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 62 | 24.55 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 63 | 24.56 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 70 | 24.58 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 74 | 24.60 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 95 | 24.72 | temperature | 15.0 | 90 | > th | dose dependent | no | NA | NA |
| 107 | 24.78 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 108 | 24.79 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 116 | 24.83 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 128 | 24.86 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 130 | 24.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 136 | 24.89 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 146 | 24.91 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 178 | 25.04 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 180 | 25.06 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 189 | 25.07 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 218 | 25.17 | temperature | 30.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 270 | 25.29 | temperature | 10.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 312 | 25.35 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 339 | 25.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 413 | 25.54 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 467 | 25.62 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 470 | 25.62 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 496 | 25.66 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 530 | 25.69 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 559 | 25.71 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 567 | 25.72 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 581 | 25.73 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 585 | 25.74 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 635 | 25.77 | temperature | 25.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 675 | 25.80 | temperature | 20.0 | 720 | > th | dose independent | sin | 16 | NA |
| 711 | 25.83 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 733 | 25.84 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 734 | 25.84 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 735 | 25.84 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 769 | 25.86 | temperature | 20.0 | 720 | > th | dose independent | rect. | 7 | 19 |
| 794 | 25.88 | temperature | 25.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 856 | 25.92 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 13 |