BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0623400 Os07g0623400|J090013L10
         (101 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63670.1  | chr5:25488012-25489247 FORWARD LENGTH=117          140   2e-34
AT5G08565.1  | chr5:2775964-2777154 FORWARD LENGTH=117            136   2e-33

>AT5G63670.1 | chr5:25488012-25489247 FORWARD LENGTH=117
          Length = 116

 Score =  140 bits (352), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 67/78 (85%)

Query: 21 AQIPTSFGHELRACLRCRLVKTYDQFMEQGCENCPFLDMERDHDNVVNCTTPNFTGIISV 80
          AQIPTSFGHELRACLRCRLVKTYDQF + GCENCPF  ME DH+ +V  TTPNF GIISV
Sbjct: 6  AQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFNGIISV 65

Query: 81 MDPGRSWAARWLRIGEYV 98
          MDP RSWAARWLRIG++ 
Sbjct: 66 MDPSRSWAARWLRIGKFA 83



>AT5G08565.1 | chr5:2775964-2777154 FORWARD LENGTH=117
          Length = 116

 Score =  136 bits (342), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 68/78 (87%)

Query: 21 AQIPTSFGHELRACLRCRLVKTYDQFMEQGCENCPFLDMERDHDNVVNCTTPNFTGIISV 80
          AQIPTSFGHELRACLRCRLVKTYDQF + GCENCPF  +E DH+ +V+ TTPNF GIIS+
Sbjct: 6  AQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFNGIISM 65

Query: 81 MDPGRSWAARWLRIGEYV 98
          MDP RSWAARWLRIG++ 
Sbjct: 66 MDPRRSWAARWLRIGKFA 83



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.140    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,123,970
Number of extensions: 76802
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 101
Length of database: 11,106,569
Length adjustment: 71
Effective length of query: 30
Effective length of database: 9,160,033
Effective search space: 274800990
Effective search space used: 274800990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)