Os07g0623000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF343 family protein.
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Os07g0623000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF343 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.15 | 0.231 | 13.2 | 0.973 | 0.496 | -0.27 | -0.414 | -0.0931 | 0.231 | 15.5 | 24.7 | 110 | -- | -- |
| 24.18 | 0.229 | 13.2 | 0.945 | 0.497 | -0.272 | -0.366 | -- | 0.223 | 15.5 | 24.62 | 110 | -- | -- |
| 24.59 | 0.231 | 13.2 | 0.929 | 0.506 | -0.265 | -- | 0.0429 | 0.22 | 15.6 | 24.6 | 122 | -- | -- |
| 24.6 | 0.231 | 13.2 | 0.941 | 0.498 | -0.268 | -- | -- | 0.224 | 15.6 | 24.7 | 110 | -- | -- |
| 31.64 | 0.262 | 13.2 | 0.857 | -- | -0.48 | -- | 0.112 | 0.199 | -- | 25.84 | 132 | -- | -- |
| 28.52 | 0.25 | 13.2 | 1.03 | 0.663 | -- | -0.263 | -- | 0.371 | 15.6 | -- | -- | -- | -- |
| 28.73 | 0.251 | 13.2 | 1.02 | 0.662 | -- | -- | -- | 0.369 | 15.6 | -- | -- | -- | -- |
| 31.72 | 0.262 | 13.2 | 0.866 | -- | -0.499 | -- | -- | 0.197 | -- | 25.85 | 137 | -- | -- |
| 47.66 | 0.322 | 13.3 | -- | 0.315 | -0.431 | -- | -- | 0.129 | 14.7 | 25.88 | 205 | -- | -- |
| 53.11 | 0.341 | 13.2 | 0.995 | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
| 56.27 | 0.351 | 13.2 | -- | 0.642 | -- | -- | -- | 0.255 | 15.6 | -- | -- | -- | -- |
| 51.13 | 0.333 | 13.3 | -- | -- | -0.567 | -- | -- | 0.0818 | -- | 25.9 | 138 | -- | -- |
| 79.2 | 0.415 | 13.2 | -- | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 2 | 21.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 4 | 22.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 7 | 22.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 11 | 22.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 86 | 23.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 17 |
| 88 | 23.09 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 21 |
| 89 | 23.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 19 |
| 98 | 23.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 99 | 23.14 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 19 |
| 107 | 23.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 135 | 23.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 20 |
| 181 | 23.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 252 | 23.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 256 | 23.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 280 | 23.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 295 | 23.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 296 | 23.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 337 | 23.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 369 | 23.97 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 394 | 24.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 410 | 24.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 429 | 24.07 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 17 |
| 461 | 24.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 488 | 24.14 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 21 |
| 500 | 24.16 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 23 |
| 525 | 24.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 544 | 24.21 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 556 | 24.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 576 | 24.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 611 | 24.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 632 | 24.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 643 | 24.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 644 | 24.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 674 | 24.29 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 715 | 24.30 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 21 |
| 721 | 24.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 766 | 24.33 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 792 | 24.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 795 | 24.34 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 808 | 24.34 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 23 |
| 893 | 24.38 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 899 | 24.39 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 978 | 24.42 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 23 |
| 979 | 24.42 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 980 | 24.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 981 | 24.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 983 | 24.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |