BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0623000 Os07g0623000|AK063693
         (133 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78190.1  | chr1:29418620-29418994 REVERSE LENGTH=125          116   4e-27
AT1G22270.1  | chr1:7865548-7865922 FORWARD LENGTH=125             85   1e-17

>AT1G78190.1 | chr1:29418620-29418994 REVERSE LENGTH=125
          Length = 124

 Score =  116 bits (290), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 7/131 (5%)

Query: 1   MRLLTHNMLASNARGAVTGYPLKLQVVKWSTKEAEPNPEFLRGMLPKIDWPALVAATQXX 60
           MRL+ HNML+ N +G V  +PL+++  K + KE + NP+FLR M  KIDW ALV   +  
Sbjct: 1   MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSM 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLHRALLEIHIEEGALVCPDTDRCFPISRG 120
                                        R+ H ALLE+H+EEG+LVCP+T R F +S+G
Sbjct: 61  EYTELPDNAPDTTTLESDETFL-------RKFHHALLELHLEEGSLVCPETGRKFSVSKG 113

Query: 121 VPNMLLHEDEV 131
           +PNMLLHEDEV
Sbjct: 114 IPNMLLHEDEV 124



>AT1G22270.1 | chr1:7865548-7865922 FORWARD LENGTH=125
          Length = 124

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 78/131 (59%), Gaps = 7/131 (5%)

Query: 1   MRLLTHNMLASNARGAVTGYPLKLQVVKWSTKEAEPNPEFLRGMLPKIDWPALVAATQXX 60
           MRL+THNML+ N +G  +G+PL+++      KE + NP+F+R M  KI+W ALV   +  
Sbjct: 1   MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLHRALLEIHIEEGALVCPDTDRCFPISRG 120
                                        ++LH ALLE+H+EEGALVCP+T R FP+++G
Sbjct: 61  GYAELPEESPDAAVLKSDEPFL-------KKLHHALLELHLEEGALVCPETGRKFPVNKG 113

Query: 121 VPNMLLHEDEV 131
           +PNMLLHEDEV
Sbjct: 114 IPNMLLHEDEV 124



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,202,941
Number of extensions: 57594
Number of successful extensions: 114
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 4
Length of query: 133
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 45
Effective length of database: 8,693,961
Effective search space: 391228245
Effective search space used: 391228245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)