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Os07g0620400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GTP-binding protein-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.01 (0.0183) R2 : 0.695
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.943 (0.0433) R2dC : 0.318 R2C : 0.322
β3 : 1.37 (0.0803) R2dE : 0.212 R2E : 0.284
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.402 (0.0395) R2dN8 : 0.0951 R2N8 : 0.143
σ : 0.34
deviance : 53.42
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C
peak time of C : 0.608
E
wheather : temperature
threshold : 18.5
memory length : 3373
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.79 0.341 9.06 -0.0221 0.933 0.704 0.196 -1.54 0.378 0.51 19.6 2778 -- --
53.29 0.34 9.01 0.119 0.941 1.31 0.173 -- 0.439 0.556 18.42 3373 -- --
52.85 0.339 9.06 -0.0232 0.95 0.767 -- -1.45 0.377 0.516 19.5 2942 -- --
53.3 0.34 9.01 0.102 0.935 1.31 -- -- 0.425 0.579 18.4 3365 -- --
104.35 0.476 9.03 0.0239 -- 0.887 -- -1.31 0.39 -- 19.67 2393 -- --
74.5 0.405 8.96 0.718 0.961 -- 0.129 -- 0.657 0.601 -- -- -- --
74.58 0.404 8.96 0.713 0.961 -- -- -- 0.657 0.601 -- -- -- --
104.2 0.475 9 0.12 -- 1.37 -- -- 0.42 -- 18.5 2375 -- --
53.42 0.34 9.01 -- 0.943 1.37 -- -- 0.402 0.608 18.5 3373 -- --
132.41 0.538 8.94 0.747 -- -- -- -- 0.673 -- -- -- -- --
87.99 0.439 8.97 -- 0.971 -- -- -- 0.577 0.637 -- -- -- --
104.46 0.476 9 -- -- 1.43 -- -- 0.404 -- 18.44 2375 -- --
147.14 0.566 8.96 -- -- -- -- -- 0.59 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.55 temperature 20 4320 > th dose independent rect. 21 1
2 49.93 temperature 20 4320 < th dose independent rect. 21 1
10 51.23 temperature 20 1440 < th dose independent rect. 5 1
11 51.25 temperature 20 1440 > th dose independent rect. 5 2
23 51.47 temperature 20 1440 < th dose independent rect. 21 10
25 51.51 temperature 20 1440 > th dose independent rect. 21 10
43 51.74 temperature 20 1440 < th dose independent rect. 3 4
48 51.79 temperature 20 1440 > th dose independent rect. 21 6
50 51.79 temperature 20 1440 < th dose independent rect. 21 6
59 51.85 humidity 90 14400 > th dose independent rect. 23 1
60 51.85 temperature 20 1440 > th dose independent rect. 3 4
66 51.87 temperature 20 1440 > th dose independent rect. 1 7
78 51.93 humidity 90 14400 < th dose independent rect. 23 2
153 52.38 humidity 60 43200 < th dose dependent rect. 20 13
158 52.41 humidity 90 14400 > th dose dependent rect. 5 1
167 52.49 temperature 20 1440 > th dose independent sin 9 NA
175 52.53 temperature 20 1440 < th dose independent sin 9 NA
177 52.54 radiation 30 14400 > th dose independent rect. 7 1
246 52.83 wind 1 14400 > th dose independent rect. 23 3
259 52.89 radiation 30 4320 < th dose independent rect. 16 16
265 52.93 radiation 30 14400 > th dose dependent rect. 7 1
321 53.17 humidity 50 43200 > th dose independent rect. 20 13
367 53.32 atmosphere 1015 43200 < th dose independent rect. 18 2
371 53.33 humidity 50 43200 < th dose independent rect. 8 1
376 53.34 humidity 50 43200 > th dose independent rect. 6 3
377 53.34 wind 1 14400 < th dose dependent rect. 21 5
379 53.35 wind 1 14400 < th dose independent rect. 22 4
383 53.38 wind 9 43200 > th dose independent rect. 16 1
386 53.39 radiation 40 14400 < th dose independent rect. 1 7
394 53.43 radiation 40 14400 < th dose independent rect. 6 2
403 53.44 atmosphere 1015 43200 < th dose independent rect. 13 7
405 53.44 radiation 40 14400 < th dose independent rect. 18 14
410 53.45 radiation 40 14400 < th dose independent rect. 20 12
417 53.50 temperature 20 4320 > th dose dependent rect. 9 2
418 53.50 humidity 90 14400 > th dose dependent rect. 4 3
422 53.51 atmosphere 1015 43200 > th dose independent rect. 12 8
435 53.54 humidity 60 43200 < th dose dependent rect. 7 2
444 53.58 atmosphere 1015 43200 > th dose dependent rect. 13 1
452 53.60 atmosphere 1015 43200 < th dose independent rect. 14 2
456 53.60 humidity 50 43200 < th dose independent rect. 20 13
460 53.61 atmosphere 1015 43200 > th dose independent rect. 13 3
462 53.61 atmosphere 1015 43200 < th dose independent rect. 13 4
463 53.61 atmosphere 1015 43200 > th dose independent rect. 12 5
485 53.64 atmosphere 1015 43200 > th dose dependent rect. 12 3
506 53.70 wind 1 43200 > th dose independent rect. 2 1
509 53.70 humidity 80 14400 > th dose dependent rect. 24 1
513 53.71 humidity 50 43200 > th dose independent rect. 1 8
516 53.71 humidity 60 43200 < th dose dependent rect. 4 5
517 53.71 wind 1 14400 < th dose dependent rect. 19 7
518 53.71 humidity 60 43200 < th dose dependent rect. 2 7
549 53.76 humidity 90 14400 > th dose dependent rect. 24 15
571 53.81 atmosphere 1015 43200 > th dose dependent rect. 11 9
576 53.83 humidity 70 43200 < th dose independent rect. 11 1
582 53.85 humidity 70 43200 > th dose independent rect. 11 1
595 53.88 radiation 20 4320 < th dose independent rect. 17 6
612 53.92 humidity 90 14400 > th dose independent rect. 22 6
678 54.11 humidity 90 14400 > th dose independent rect. 22 9
683 54.12 wind 9 43200 < th dose independent rect. 16 1
691 54.12 atmosphere 1015 43200 > th dose dependent rect. 18 4
699 54.14 radiation 10 43200 < th dose independent rect. 17 10
706 54.15 radiation 10 43200 < th dose independent rect. 17 3
709 54.15 radiation 10 43200 < th dose independent rect. 17 8
776 54.24 radiation 20 4320 < th dose independent rect. 17 13
788 54.26 temperature 10 43200 < th dose dependent rect. 3 2
805 54.29 radiation 40 43200 < th dose dependent rect. 23 6
821 54.32 wind 1 14400 < th dose dependent rect. 24 1
822 54.32 atmosphere 1015 43200 > th dose dependent rect. 20 1
842 54.34 radiation 10 4320 > th dose dependent rect. 16 16
878 54.41 atmosphere 1015 43200 > th dose dependent sin 18 NA
884 54.42 radiation 20 4320 < th dose independent rect. 17 2
918 54.48 wind 9 43200 < th dose independent rect. 8 7
920 54.48 temperature 15 1440 > th dose dependent rect. 2 1
934 54.50 wind 9 43200 > th dose independent rect. 8 7
952 54.53 temperature 10 43200 < th dose independent rect. 4 1
972 54.54 temperature 25 1440 < th dose dependent rect. 2 1
979 54.55 humidity 50 43200 > th dose independent rect. 14 1
986 54.56 temperature 10 43200 > th dose independent rect. 4 1
993 54.56 humidity 90 14400 > th dose dependent rect. 3 5