Os07g0619700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0619700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.96 | 0.355 | 9.86 | -0.93 | 0.354 | -0.589 | -0.185 | -1.06 | -0.344 | 21.4 | 24.8 | 1423 | -- | -- |
| 57.18 | 0.352 | 9.9 | -1.28 | 0.338 | -0.621 | -0.143 | -- | -0.441 | 21.9 | 22.48 | 1926 | -- | -- |
| 57.09 | 0.352 | 9.86 | -0.929 | 0.355 | -0.589 | -- | -1.04 | -0.345 | 21.5 | 24.8 | 1422 | -- | -- |
| 57.18 | 0.352 | 9.89 | -1.27 | 0.331 | -0.608 | -- | -- | -0.439 | 22.1 | 22.4 | 1925 | -- | -- |
| 61.1 | 0.364 | 9.86 | -0.967 | -- | -0.645 | -- | -0.916 | -0.378 | -- | 22.5 | 2243 | -- | -- |
| 71.4 | 0.396 | 9.84 | -1.03 | 0.359 | -- | -0.116 | -- | -0.219 | 22.1 | -- | -- | -- | -- |
| 71.45 | 0.396 | 9.84 | -1.03 | 0.359 | -- | -- | -- | -0.219 | 22.1 | -- | -- | -- | -- |
| 62.9 | 0.369 | 9.89 | -1.29 | -- | -0.651 | -- | -- | -0.463 | -- | 22.5 | 2232 | -- | -- |
| 94.91 | 0.454 | 9.84 | -- | 0.334 | -0.299 | -- | -- | -0.207 | 21.8 | 22.59 | 1244 | -- | -- |
| 79.25 | 0.416 | 9.83 | -1.02 | -- | -- | -- | -- | -0.218 | -- | -- | -- | -- | -- |
| 99.23 | 0.466 | 9.82 | -- | 0.355 | -- | -- | -- | -0.104 | 21.9 | -- | -- | -- | -- |
| 99.97 | 0.466 | 9.84 | -- | -- | -0.307 | -- | -- | -0.166 | -- | 22.33 | 862 | -- | -- |
| 106.78 | 0.482 | 9.81 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 2 | 53.76 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 27 | 54.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 36 | 54.13 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 79 | 54.47 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 115 | 54.69 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 167 | 54.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 198 | 54.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 281 | 55.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 359 | 55.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 382 | 55.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 458 | 55.73 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 485 | 55.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 486 | 55.77 | temperature | 15 | 4320 | > th | dose dependent | sin | 11 | NA |
| 554 | 55.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 671 | 56.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 716 | 56.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 874 | 56.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 924 | 56.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 993 | 56.43 | radiation | 20 | 4320 | < th | dose dependent | rect. | 16 | 1 |