Os07g0618600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, FYVE-type domain containing protein.
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Os07g0618600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, FYVE-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.51 | 0.202 | 11.6 | 0.151 | 0.599 | 0.422 | 0.0599 | -0.15 | 0.26 | 21.9 | 22.06 | 30 | -- | -- |
| 18.54 | 0.201 | 11.6 | 0.147 | 0.606 | 0.413 | -0.0824 | -- | 0.257 | 21.9 | 22.23 | 27 | -- | -- |
| 18.52 | 0.2 | 11.6 | 0.15 | 0.594 | 0.426 | -- | -0.108 | 0.261 | 21.9 | 22.09 | 28 | -- | -- |
| 18.55 | 0.201 | 11.6 | 0.152 | 0.602 | 0.415 | -- | -- | 0.257 | 21.9 | 22.2 | 25 | -- | -- |
| 25.23 | 0.235 | 11.6 | 0.139 | -- | 0.775 | -- | -0.157 | 0.237 | -- | 12.8 | 23 | -- | -- |
| 21.49 | 0.217 | 11.6 | 0.135 | 0.976 | -- | -0.066 | -- | 0.232 | 22.8 | -- | -- | -- | -- |
| 21.51 | 0.217 | 11.6 | 0.138 | 0.976 | -- | -- | -- | 0.232 | 22.8 | -- | -- | -- | -- |
| 25.24 | 0.234 | 11.6 | 0.13 | -- | 0.765 | -- | -- | 0.252 | -- | 10.99 | 13 | -- | -- |
| 19.17 | 0.204 | 11.6 | -- | 0.604 | 0.413 | -- | -- | 0.247 | 21.9 | 21.18 | 25 | -- | -- |
| 80.53 | 0.419 | 11.6 | 0.158 | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
| 22.01 | 0.219 | 11.6 | -- | 0.977 | -- | -- | -- | 0.217 | 22.8 | -- | -- | -- | -- |
| 25.65 | 0.236 | 11.6 | -- | -- | 0.764 | -- | -- | 0.25 | -- | 10.69 | 13 | -- | -- |
| 81.19 | 0.421 | 11.6 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.38 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 7 |
| 2 | 15.40 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 6 |
| 4 | 15.52 | temperature | 20.0 | 90 | > th | dose independent | rect. | 13 | 16 |
| 11 | 15.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 12 | 15.67 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 21 | 15.73 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 24 | 15.77 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 25 | 15.79 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 31 | 15.82 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 17 |
| 33 | 15.84 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 52 | 15.94 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 57 | 15.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 75 | 16.03 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 101 | 16.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 126 | 16.20 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 9 |
| 206 | 16.40 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 2 | 14 |
| 223 | 16.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 16 |
| 228 | 16.45 | radiation | 1.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 248 | 16.48 | humidity | 80.0 | 90 | > th | dose independent | rect. | 1 | 16 |
| 266 | 16.49 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 2 | 12 |
| 275 | 16.51 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 21 |
| 315 | 16.56 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 350 | 16.60 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 14 | 15 |
| 423 | 16.69 | radiation | 1.0 | 270 | > th | dose independent | sin | 6 | NA |
| 432 | 16.69 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 433 | 16.70 | radiation | 1.0 | 270 | < th | dose independent | sin | 6 | NA |
| 477 | 16.74 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 509 | 16.77 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 15 |
| 530 | 16.80 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 531 | 16.80 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 584 | 16.85 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 2 | 10 |
| 594 | 16.87 | humidity | 70.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 656 | 16.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 16 |
| 663 | 16.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 710 | 16.99 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 16 |
| 728 | 17.01 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 729 | 17.01 | wind | 7.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 751 | 17.03 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 8 |
| 752 | 17.03 | humidity | 90.0 | 90 | < th | dose independent | rect. | 5 | 8 |
| 798 | 17.07 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 7 |
| 845 | 17.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 846 | 17.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 848 | 17.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 849 | 17.10 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 850 | 17.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 866 | 17.11 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 9 |
| 908 | 17.14 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 18 |
| 910 | 17.14 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 918 | 17.15 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 16 |
| 919 | 17.15 | radiation | 40.0 | 270 | < th | dose independent | rect. | 24 | 16 |
| 946 | 17.17 | radiation | 1.0 | 90 | > th | dose independent | sin | 2 | NA |
| 958 | 17.18 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 961 | 17.18 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 977 | 17.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 8 |
| 983 | 17.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 996 | 17.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 999 | 17.20 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 8 |