BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0618600 Os07g0618600|AK121137
(297 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26210.1 | chr2:11157654-11159016 FORWARD LENGTH=191 155 3e-38
AT5G61230.1 | chr5:24628254-24628778 FORWARD LENGTH=175 49 2e-06
AT4G18950.1 | chr4:10375685-10378129 FORWARD LENGTH=460 47 9e-06
>AT2G26210.1 | chr2:11157654-11159016 FORWARD LENGTH=191
Length = 190
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 108/180 (60%), Gaps = 27/180 (15%)
Query: 115 VIECKCGMPLCICEAP-----KPEPVPVKXXXXXXXXXXXXNPRPKKSSTNQQXXXXXXX 169
+ECKCGMPLCIC AP KP P + + K S+++
Sbjct: 31 TMECKCGMPLCICVAPPKSTDKPNPPATIAPVVLPQLKSEASAKSKGSTSSSNARSA--- 87
Query: 170 XXXXXXXXXXXXFLNLGLMSNDTNDKGPSEYDVTGEGLREAIKSGDIKAVKKLLSQGVDS 229
LN GL D +Y+ +GEGLREAIK+GD KKLL +GVD+
Sbjct: 88 -------------LNAGL------DTPQRDYEASGEGLREAIKNGDSAGAKKLLKEGVDA 128
Query: 230 NYCDKQGFALLHLAALFNQTEIALILMDNGANIQSKNGQGETPLDCAPAMLQYKMRQRME 289
NY D+QG ++LHLA LFNQT+IAL+LMD+GA+++ KN QGETPLDCAPA LQYKMR++M+
Sbjct: 129 NYRDRQGMSVLHLAVLFNQTDIALMLMDHGASLEYKNAQGETPLDCAPATLQYKMREKMK 188
>AT5G61230.1 | chr5:24628254-24628778 FORWARD LENGTH=175
Length = 174
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 212 KSGDIKAVKKLLSQGVDSNYC----DKQGFALLHLAALFNQTEIALILMDNGANIQSKNG 267
+ GD+K+VK+LL QG+D N +G + LHLAA E+ +L++ GANI +K
Sbjct: 38 RKGDLKSVKQLLDQGMDVNALAWGPKSKGVSALHLAAEGGHIEVMDLLLERGANIDAKTW 97
Query: 268 Q--GETPLDCA 276
G TPL A
Sbjct: 98 GSCGWTPLHAA 108
>AT4G18950.1 | chr4:10375685-10378129 FORWARD LENGTH=460
Length = 459
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 213 SGDIKAVKKLLSQGVDSNYCDKQGFALLHLAALFNQTEIALILMDNGANIQSKNGQGETP 272
GDI+ +K+L+ G+D+NY D LH+AA ++ +L+D A + K+ G TP
Sbjct: 53 EGDIEGIKELIDSGIDANYRDIDDRTALHVAACQGLKDVVELLLDRKAEVDPKDRWGSTP 112
Query: 273 L 273
Sbjct: 113 F 113
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,889,274
Number of extensions: 229371
Number of successful extensions: 580
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 3
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)