Os07g0617800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alanine aminotransferase.
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Os07g0617800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alanine aminotransferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.27 | 0.231 | 11 | -0.327 | 0.267 | -0.441 | -0.191 | -0.954 | -0.305 | 6.75 | 17.54 | 4563 | -- | -- |
| 25.01 | 0.233 | 11 | -0.369 | 0.352 | -0.424 | -0.0182 | -- | -0.317 | 7.14 | 21.72 | 4962 | -- | -- |
| 24.35 | 0.23 | 11 | -0.328 | 0.264 | -0.436 | -- | -0.932 | -0.31 | 6.96 | 17.22 | 4555 | -- | -- |
| 24.99 | 0.233 | 11 | -0.387 | 0.366 | -0.443 | -- | -- | -0.32 | 7.14 | 21.85 | 4980 | -- | -- |
| 27.79 | 0.246 | 11 | -0.33 | -- | -0.428 | -- | -0.781 | -0.298 | -- | 20 | 4475 | -- | -- |
| 27.98 | 0.248 | 11 | -0.415 | 0.257 | -- | 0.0218 | -- | -0.246 | 7.94 | -- | -- | -- | -- |
| 27.98 | 0.248 | 11 | -0.415 | 0.257 | -- | -- | -- | -0.246 | 7.9 | -- | -- | -- | -- |
| 28.31 | 0.248 | 11 | -0.341 | -- | -0.434 | -- | -- | -0.332 | -- | 10 | 5851 | -- | -- |
| 28.5 | 0.249 | 11 | -- | 0.246 | -0.4 | -- | -- | -0.297 | 8.26 | 93.93 | 7248 | -- | -- |
| 31.57 | 0.263 | 11 | -0.412 | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
| 32.51 | 0.267 | 11 | -- | 0.254 | -- | -- | -- | -0.2 | 8.01 | -- | -- | -- | -- |
| 31.24 | 0.26 | 11 | -- | -- | -0.517 | -- | -- | -0.309 | -- | 10 | 5854 | -- | -- |
| 36.05 | 0.28 | 11 | -- | -- | -- | -- | -- | -0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.67 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 2 | 23.76 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 3 | 23.82 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 4 | 5 |
| 9 | 23.82 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 14 | 23.84 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 16 | 23.85 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 8 | 3 |
| 35 | 23.94 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 50 | 23.98 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 52 | 23.98 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 4 | 7 |
| 58 | 23.98 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 61 | 23.99 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 70 | 24.02 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 80 | 24.02 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 101 | 24.05 | radiation | 10.0 | 4320 | < th | dose dependent | sin | 8 | NA |
| 156 | 24.14 | wind | 5.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 186 | 24.16 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 192 | 24.16 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 232 | 24.19 | radiation | 10.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 263 | 24.22 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 280 | 24.23 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 281 | 24.23 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 284 | 24.24 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 285 | 24.24 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 329 | 24.26 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 352 | 24.29 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 357 | 24.29 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 368 | 24.30 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 384 | 24.32 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 421 | 24.34 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 448 | 24.36 | humidity | 80.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 458 | 24.37 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 541 | 24.40 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 565 | 24.42 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 647 | 24.45 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 665 | 24.46 | wind | 1.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 692 | 24.47 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 693 | 24.47 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 696 | 24.47 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 769 | 24.49 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 22 | 22 |
| 833 | 24.53 | radiation | 10.0 | 4320 | > th | dose independent | sin | 8 | NA |
| 838 | 24.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 858 | 24.53 | radiation | 1.0 | 4320 | > th | dose dependent | sin | 10 | NA |
| 865 | 24.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 880 | 24.54 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 902 | 24.55 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 966 | 24.57 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 969 | 24.57 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 7 |