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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0617500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant disease resistance response protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.23 (0.0413) R2 : 0.676
β1 : 1.43 (0.155) R2dD : 0.061 R2D : 0.0334
β2 : 2.43 (0.107) R2dC : 0.372 R2C : 0.414
β3 : -3.01 (0.208) R2dE : 0.187 R2E : 0.216
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.347 (0.093) R2dN8 : 0.018 R2N8 : 0.0492
σ : 0.76
deviance : 266.15
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_____
C
peak time of C : 5.46
E
wheather : temperature
threshold : 17.6
memory length : 326
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.9
open length of G : 21.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
247.94 0.74 5.21 1.71 2.32 -2.95 2.69 2.64 -0.285 5.68 18.99 300 17.1 21.2
254.94 0.744 5.21 1.55 2.38 -2.94 3.02 -- -0.335 5.65 17.9 307 17 21.3
265.03 0.758 5.21 1.73 2.38 -2.95 -- 2.58 -0.273 5.56 18.7 305 17 21.2
266.15 0.76 5.23 1.43 2.43 -3.01 -- -- -0.347 5.46 17.6 326 16.9 21.2
401.81 0.934 5.23 1.91 -- -3.9 -- 1.39 -0.142 -- 18.7 263 16.6 24
368.16 0.9 5.37 0.702 2.58 -- 2.39 -- -0.892 5.16 -- -- -- --
382.1 0.915 5.38 0.7 2.59 -- -- -- -0.904 5.04 -- -- -- --
403.05 0.935 5.26 1.67 -- -3.88 -- -- -0.215 -- 18.4 262 16 24
304.85 0.813 5.31 -- 2.53 -2.1 -- -- -0.629 5.32 19.58 349 16.9 20.3
734.85 1.27 5.4 0.793 -- -- -- -- -0.837 -- -- -- -- --
395.01 0.93 5.39 -- 2.6 -- -- -- -0.982 5.03 -- -- -- --
469.91 1.01 5.32 -- -- -3.32 -- -- -0.464 -- 19.66 259 16.5 24
751.46 1.28 5.42 -- -- -- -- -- -0.925 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 252.24 temperature 20 270 > th dose dependent rect. 17 21
4 257.93 temperature 20 270 > th dose dependent sin 8 NA
9 260.12 temperature 10 270 > th dose dependent rect. 4 22
11 260.34 temperature 30 90 < th dose dependent rect. 23 23
44 265.25 temperature 20 10 > th dose dependent rect. 6 21
52 266.20 temperature 30 10 < th dose dependent rect. 3 23
56 266.44 temperature 30 270 < th dose dependent rect. 7 23
64 267.15 temperature 20 270 > th dose dependent rect. 19 15
73 267.74 temperature 30 270 < th dose dependent sin 9 NA
89 268.98 temperature 30 90 < th dose dependent rect. 13 23
97 269.51 temperature 30 10 < th dose dependent rect. 9 23
111 269.85 temperature 30 90 < th dose dependent sin 7 NA
120 270.38 temperature 20 1440 > th dose independent rect. 4 3
121 270.38 temperature 20 1440 < th dose independent rect. 4 3
131 271.01 temperature 15 10 > th dose dependent no NA NA
133 271.07 temperature 30 10 < th dose dependent rect. 14 22
142 271.43 temperature 20 10 > th dose dependent rect. 21 23
144 271.46 temperature 20 1440 > th dose independent rect. 5 1
146 271.52 temperature 30 90 < th dose dependent no NA NA
151 271.71 temperature 15 1440 > th dose dependent rect. 1 2
158 271.86 temperature 20 10 > th dose dependent rect. 1 23
161 271.90 temperature 30 1440 < th dose dependent rect. 1 2
162 271.96 temperature 30 10 < th dose dependent rect. 11 23
172 272.12 temperature 30 10 < th dose dependent no NA NA
174 272.16 temperature 30 1440 < th dose dependent rect. 1 4
176 272.26 temperature 15 1440 > th dose dependent rect. 1 4
183 272.35 temperature 25 4320 < th dose dependent rect. 21 1
240 273.18 temperature 10 720 > th dose dependent rect. 19 14
292 273.92 temperature 30 10 < th dose dependent rect. 7 23
293 273.93 temperature 25 4320 < th dose dependent rect. 21 5
302 273.98 temperature 25 4320 < th dose dependent rect. 20 7
316 274.08 temperature 25 1440 < th dose dependent rect. 17 14
333 274.23 temperature 25 4320 < th dose dependent rect. 17 10
361 274.41 temperature 30 10 < th dose dependent rect. 23 23
381 274.58 temperature 20 4320 > th dose independent rect. 22 1
388 274.63 temperature 20 10 > th dose dependent rect. 21 19
420 274.82 temperature 20 4320 < th dose independent rect. 18 7
425 274.84 temperature 25 1440 < th dose dependent sin 11 NA
440 274.93 temperature 15 4320 > th dose dependent rect. 21 6
500 275.31 temperature 20 4320 < th dose independent rect. 20 4
524 275.42 temperature 20 4320 > th dose independent rect. 18 8
569 275.62 temperature 10 720 > th dose dependent rect. 21 19
654 276.01 temperature 20 4320 < th dose independent rect. 21 2
668 276.08 temperature 30 10 < th dose dependent rect. 19 23
717 276.30 temperature 20 4320 < th dose independent sin 15 NA
753 276.46 temperature 30 10 < th dose dependent rect. 1 23
786 276.62 temperature 20 4320 > th dose independent sin 15 NA
789 276.62 temperature 30 10 < th dose dependent rect. 17 23
961 277.43 temperature 30 270 < th dose dependent rect. 23 14