Os07g0616600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein SA (p40) (Laminin receptor homolog).
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Os07g0616600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein SA (p40) (Laminin receptor homolog).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.6 | 0.555 | 12 | 0.691 | 0.666 | 1.13 | 1.58 | 2.95 | -0.112 | 20.4 | 18.89 | 93 | -- | -- |
| 149.72 | 0.57 | 12 | 0.733 | 0.639 | 0.776 | 1.09 | -- | -0.0906 | 19.5 | 16.97 | 73 | -- | -- |
| 146.19 | 0.563 | 12 | 0.691 | 0.649 | 1.16 | -- | 2.77 | -0.0962 | 19.9 | 26.92 | 94 | -- | -- |
| 152.67 | 0.575 | 12 | 0.689 | 0.658 | 0.85 | -- | -- | -0.08 | 19.8 | 16.46 | 73 | -- | -- |
| 166.54 | 0.601 | 12 | 0.653 | -- | 1 | -- | 2.68 | -0.119 | -- | 28.53 | 127 | -- | -- |
| 159.16 | 0.591 | 12 | 0.7 | 0.624 | -- | 1.27 | -- | -0.0657 | 18.1 | -- | -- | -- | -- |
| 163.13 | 0.598 | 12 | 0.688 | 0.631 | -- | -- | -- | -0.0609 | 18 | -- | -- | -- | -- |
| 169.12 | 0.606 | 12 | 0.635 | -- | 0.561 | -- | -- | -0.165 | -- | 20 | 720 | -- | -- |
| 164.14 | 0.6 | 12 | -- | 0.688 | 0.817 | -- | -- | -0.13 | 20.1 | 9.999 | 91 | -- | -- |
| 183.74 | 0.633 | 12 | 0.67 | -- | -- | -- | -- | -0.0752 | -- | -- | -- | -- | -- |
| 175.6 | 0.62 | 12 | -- | 0.62 | -- | -- | -- | -0.138 | 18.1 | -- | -- | -- | -- |
| 177.58 | 0.621 | 12 | -- | -- | 0.704 | -- | -- | -0.213 | -- | -13.66 | 734 | -- | -- |
| 195.56 | 0.653 | 12 | -- | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.92 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 131.09 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 8 | 132.29 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 39 | 134.25 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 43 | 134.41 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 48 | 134.68 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 53 | 134.82 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 58 | 134.94 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 65 | 135.26 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 69 | 135.39 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 70 | 135.47 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 76 | 135.59 | radiation | 40.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 77 | 135.59 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 90 | 135.85 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 113 | 136.08 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 154 | 136.29 | radiation | 20.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 158 | 136.35 | radiation | 1.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 186 | 136.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 207 | 136.92 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 15 |
| 208 | 136.93 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 222 | 137.09 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 227 | 137.16 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 243 | 137.28 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 279 | 137.40 | radiation | 40.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 286 | 137.49 | radiation | 20.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 292 | 137.65 | humidity | 50.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 300 | 137.77 | radiation | 20.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 362 | 137.97 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 398 | 138.13 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 2 | 6 |
| 470 | 138.36 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 477 | 138.41 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 478 | 138.42 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 484 | 138.44 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 498 | 138.55 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 525 | 138.77 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 6 |
| 527 | 138.77 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 545 | 138.79 | radiation | 40.0 | 90 | > th | dose independent | sin | 7 | NA |
| 547 | 138.80 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 559 | 138.84 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 14 | 18 |
| 560 | 138.85 | radiation | 40.0 | 90 | < th | dose independent | rect. | 11 | 22 |
| 578 | 138.90 | temperature | 25.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 599 | 138.93 | radiation | 40.0 | 90 | < th | dose independent | sin | 7 | NA |
| 604 | 138.95 | humidity | 80.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 607 | 138.96 | radiation | 20.0 | 270 | > th | dose independent | sin | 9 | NA |
| 640 | 139.02 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 651 | 139.06 | temperature | 15.0 | 90 | > th | dose independent | rect. | 14 | 18 |
| 672 | 139.09 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 678 | 139.12 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 679 | 139.12 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 680 | 139.12 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 748 | 139.38 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 755 | 139.40 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 778 | 139.44 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 785 | 139.48 | radiation | 20.0 | 270 | < th | dose independent | sin | 9 | NA |
| 789 | 139.48 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 793 | 139.49 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 798 | 139.51 | wind | 9.0 | 90 | < th | dose independent | rect. | 14 | 18 |
| 871 | 139.63 | radiation | 40.0 | 270 | > th | dose independent | sin | 11 | NA |
| 880 | 139.65 | radiation | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 993 | 139.67 | radiation | 40.0 | 90 | < th | dose independent | rect. | 23 | 20 |
| 994 | 139.67 | radiation | 40.0 | 90 | < th | dose independent | rect. | 21 | 23 |