BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0616600 Os07g0616600|AK102735
         (305 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72370.1  | chr1:27243148-27244842 REVERSE LENGTH=299          380   e-106
AT3G04770.1  | chr3:1309465-1310846 REVERSE LENGTH=333            365   e-101

>AT1G72370.1 | chr1:27243148-27244842 REVERSE LENGTH=299
          Length = 298

 Score =  380 bits (977), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/200 (89%), Positives = 190/200 (95%)

Query: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
           LSQ+E D++MM AA+VHLGTKNC++QMERYV+KRR DGIYI NLGKTWEKLQ+AARVIVA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
           IENPQDIIVQSARPYGQRAVLKFAQYTGA+AIAGRHTPGTFTNQ+QTSFSEPRLLILTDP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
           RTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGK SIGCLFWLLARMVLQMRG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191

Query: 192 TILPGHKWDVMVDLFFYRDP 211
           TI  G KWDVMVDLFFYR+P
Sbjct: 192 TIAAGQKWDVMVDLFFYREP 211



>AT3G04770.1 | chr3:1309465-1310846 REVERSE LENGTH=333
          Length = 332

 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 184/193 (95%)

Query: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
           +S++E DIQMML+ADVHLGTKNC++QMERYV+KRR DGIYIINLGKTW+KLQ+AARVIVA
Sbjct: 13  VSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVA 72

Query: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
           IENP+DIIVQSARPYGQRAVLKFAQYTG +AIAGRHTPGTFTNQ+QTSFSEPRLLILTDP
Sbjct: 73  IENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 132

Query: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
           RTDHQPIKE ALGNIPTIAFCDTDSPM +VDIGIPANNKGK SIGCLFWLLARMVLQMRG
Sbjct: 133 RTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 192

Query: 192 TILPGHKWDVMVD 204
           TIL   KWDVMV+
Sbjct: 193 TILAAQKWDVMVN 205



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,131,099
Number of extensions: 178108
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 2
Length of query: 305
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 207
Effective length of database: 8,419,801
Effective search space: 1742898807
Effective search space used: 1742898807
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)