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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0613900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Endonuclease/exonuclease/phosphatase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0159) R2 : 0.0088
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0674 (0.0335) R2dN8 : 0.0114 R2N8 : 0.0088
σ : 0.3
deviance : 41.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.54 0.292 3.19 0.121 0.158 -0.253 0.108 -0.753 -0.109 7.28 38.73 4856 -- --
39.28 0.292 3.19 0.0626 0.163 -0.282 0.00805 -- -0.129 7.12 26.52 4921 -- --
38.42 0.289 3.19 0.132 0.129 -0.24 -- -0.826 -0.102 7.08 34.61 5913 -- --
39.28 0.292 3.19 0.0631 0.164 -0.28 -- -- -0.129 7.03 27.36 4891 -- --
39.28 0.292 3.19 0.132 -- -0.238 -- -0.814 -0.0995 -- 34.33 5839 -- --
40.28 0.298 3.18 0.0462 0.127 -- -0.00142 -- -0.0643 7.08 -- -- -- --
40.28 0.297 3.18 0.0462 0.127 -- -- -- -0.0643 7.09 -- -- -- --
40.21 0.295 3.19 0.0689 -- -0.259 -- -- -0.119 -- 29.34 5739 -- --
39.39 0.292 3.19 -- 0.162 -0.275 -- -- -0.135 6.99 34.97 4875 -- --
41.13 0.3 3.18 0.0487 -- -- -- -- -0.062 -- -- -- -- --
40.34 0.297 3.18 -- 0.127 -- -- -- -0.0694 7.06 -- -- -- --
40.34 0.296 3.19 -- -- -0.248 -- -- -0.124 -- 31.48 5734 -- --
41.19 0.3 3.18 -- -- -- -- -- -0.0674 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.10 wind 1.0 30 < th dose dependent rect. 23 1
17 32.53 wind 1.0 270 < th dose dependent rect. 21 2
19 32.93 wind 1.0 30 < th dose dependent rect. 14 10
23 33.27 wind 1.0 270 < th dose independent rect. 21 2
90 36.66 wind 1.0 30 < th dose independent rect. 23 1
110 36.94 wind 1.0 30 < th dose dependent sin 18 NA
111 36.94 temperature 20.0 10 > th dose dependent rect. 23 1
145 37.43 wind 1.0 30 < th dose independent rect. 11 13
216 37.75 humidity 80.0 14400 < th dose dependent rect. 2 7
252 37.91 wind 1.0 30 < th dose dependent rect. 6 18
255 37.93 humidity 90.0 1440 < th dose independent rect. 2 1
274 37.98 wind 7.0 14400 < th dose independent rect. 9 1
276 37.98 humidity 80.0 14400 < th dose dependent rect. 21 13
284 38.01 wind 1.0 90 > th dose independent sin 18 NA
300 38.06 humidity 90.0 1440 < th dose dependent rect. 1 2
321 38.12 wind 7.0 14400 > th dose independent rect. 9 1
342 38.22 temperature 25.0 270 > th dose independent rect. 20 1
343 38.23 humidity 60.0 43200 < th dose independent rect. 11 1
344 38.23 humidity 70.0 14400 > th dose independent rect. 8 2
355 38.24 wind 7.0 14400 > th dose dependent rect. 9 1
362 38.25 humidity 70.0 14400 < th dose independent rect. 8 2
388 38.27 wind 3.0 90 < th dose dependent rect. 6 21
411 38.31 atmosphere 1000.0 90 > th dose independent rect. 3 23
413 38.31 humidity 80.0 1440 > th dose dependent rect. 2 1
462 38.40 humidity 50.0 1440 > th dose dependent rect. 1 2
481 38.44 wind 1.0 30 < th dose independent sin 18 NA
492 38.45 wind 1.0 30 < th dose independent rect. 6 18
493 38.46 humidity 70.0 4320 > th dose independent rect. 10 1
502 38.47 wind 3.0 14400 > th dose dependent rect. 11 1
505 38.48 temperature 30.0 1440 > th dose independent rect. 15 20
511 38.49 humidity 90.0 1440 > th dose independent rect. 2 1
513 38.49 temperature 30.0 1440 < th dose independent rect. 15 20
515 38.49 wind 7.0 14400 < th dose dependent rect. 10 2
530 38.51 humidity 50.0 4320 > th dose dependent rect. 23 15
548 38.53 wind 5.0 14400 < th dose independent rect. 10 5
549 38.53 atmosphere 1000.0 90 < th dose independent rect. 6 20
551 38.53 wind 1.0 270 < th dose dependent sin 19 NA
566 38.54 humidity 80.0 14400 < th dose dependent sin 8 NA
568 38.54 humidity 70.0 4320 > th dose dependent rect. 3 9
579 38.55 wind 3.0 14400 > th dose independent rect. 10 1
605 38.56 wind 5.0 14400 < th dose independent rect. 11 1
625 38.56 humidity 50.0 4320 > th dose dependent sin 5 NA
628 38.56 humidity 50.0 14400 > th dose dependent rect. 8 1
645 38.57 wind 5.0 14400 > th dose independent rect. 10 5
649 38.57 wind 1.0 30 < th dose independent rect. 6 21
652 38.57 temperature 30.0 1440 > th dose dependent rect. 15 1
653 38.57 humidity 50.0 4320 > th dose dependent rect. 11 2
656 38.57 temperature 20.0 10 > th dose dependent rect. 20 4
675 38.57 wind 3.0 30 < th dose dependent rect. 2 22
679 38.58 atmosphere 995.0 720 > th dose independent rect. 23 16
711 38.59 humidity 80.0 4320 > th dose independent rect. 7 6
719 38.59 wind 3.0 14400 > th dose dependent rect. 9 6
732 38.59 humidity 90.0 4320 < th dose dependent rect. 23 17
733 38.59 humidity 90.0 4320 < th dose dependent rect. 21 18
741 38.60 atmosphere 1000.0 10 > th dose independent rect. 21 23
768 38.61 temperature 30.0 1440 > th dose independent rect. 15 2
781 38.61 humidity 90.0 4320 < th dose dependent rect. 11 2
802 38.62 precipitation 0.1 14400 > th dose independent sin 4 NA
803 38.62 precipitation 0.1 14400 < th dose independent sin 4 NA
813 38.62 atmosphere 1000.0 720 > th dose independent rect. 21 14
814 38.62 precipitation 0.1 14400 > th dose independent rect. 24 16
815 38.62 precipitation 0.1 14400 < th dose independent rect. 1 16
822 38.62 precipitation 0.1 14400 < th dose dependent sin 4 NA
844 38.62 precipitation 0.1 14400 < th dose dependent rect. 1 16
858 38.63 humidity 70.0 4320 > th dose independent sin 4 NA
883 38.63 humidity 70.0 4320 > th dose independent rect. 8 10
893 38.63 precipitation 0.1 14400 > th dose independent rect. 24 13
894 38.63 precipitation 0.1 14400 < th dose independent rect. 24 13
897 38.63 humidity 70.0 4320 > th dose independent rect. 4 14
910 38.63 humidity 70.0 4320 > th dose independent rect. 1 17
928 38.63 wind 9.0 14400 > th dose dependent rect. 12 2
947 38.63 precipitation 0.1 14400 < th dose dependent rect. 24 13
958 38.64 humidity 70.0 4320 > th dose independent sin 2 NA
964 38.64 humidity 90.0 90 < th dose independent rect. 2 2
965 38.64 temperature 30.0 1440 < th dose independent rect. 15 3
988 38.64 temperature 30.0 1440 < th dose independent rect. 15 14