Os07g0598100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.
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Os07g0598100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.78 | 0.453 | 8.35 | 1.04 | 0.591 | -1.52 | 0.699 | 5.27 | -0.297 | 17.7 | 27.12 | 1224 | -- | -- |
| 104.07 | 0.475 | 8.49 | -0.144 | 0.592 | -0.882 | 0.683 | -- | -0.492 | 17.5 | 26.6 | 2617 | -- | -- |
| 93.72 | 0.451 | 8.35 | 1.06 | 0.611 | -1.57 | -- | 5.41 | -0.293 | 18.1 | 27.1 | 1199 | -- | -- |
| 105.25 | 0.478 | 8.49 | -0.142 | 0.595 | -0.907 | -- | -- | -0.486 | 17.8 | 26.51 | 2618 | -- | -- |
| 111.99 | 0.493 | 8.33 | 1.15 | -- | -1.6 | -- | 5.56 | -0.288 | -- | 27.09 | 1258 | -- | -- |
| 135.02 | 0.545 | 8.49 | -0.432 | 0.634 | -- | 1.08 | -- | -0.51 | 16.7 | -- | -- | -- | -- |
| 137.86 | 0.55 | 8.49 | -0.428 | 0.647 | -- | -- | -- | -0.504 | 17 | -- | -- | -- | -- |
| 118.02 | 0.506 | 8.43 | -0.0889 | -- | -0.937 | -- | -- | -0.303 | -- | 26.34 | 6975 | -- | -- |
| 105.74 | 0.479 | 8.48 | -- | 0.601 | -0.938 | -- | -- | -0.473 | 17.8 | 26.49 | 2618 | -- | -- |
| 159.85 | 0.591 | 8.48 | -0.451 | -- | -- | -- | -- | -0.521 | -- | -- | -- | -- | -- |
| 142.68 | 0.559 | 8.48 | -- | 0.655 | -- | -- | -- | -0.457 | 17 | -- | -- | -- | -- |
| 118.2 | 0.506 | 8.43 | -- | -- | -0.956 | -- | -- | -0.288 | -- | 26.26 | 6977 | -- | -- |
| 165.22 | 0.6 | 8.47 | -- | -- | -- | -- | -- | -0.471 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.10 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 2 | 87.14 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 5 | 87.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 6 | 87.71 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 35 | 89.09 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 67 | 90.63 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 116 | 92.43 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 156 | 93.24 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 158 | 93.36 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 163 | 93.52 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 201 | 93.91 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 8 |
| 211 | 94.12 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 4 |
| 219 | 94.33 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 221 | 94.35 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 251 | 94.51 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 9 |
| 260 | 94.73 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 264 | 94.78 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |
| 320 | 95.40 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 330 | 95.40 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 16 |
| 333 | 95.49 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 357 | 95.73 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 362 | 95.78 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 370 | 95.84 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 384 | 95.94 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 400 | 96.05 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 427 | 96.21 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 453 | 96.31 | wind | 7 | 43200 | < th | dose independent | sin | 1 | NA |
| 483 | 96.48 | wind | 7 | 43200 | > th | dose independent | sin | 1 | NA |
| 546 | 96.64 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 592 | 96.70 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 642 | 96.97 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 684 | 97.14 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 733 | 97.28 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 947 | 97.97 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 950 | 97.99 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 968 | 98.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 982 | 98.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 14 |