BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0598100 Os07g0598100|AK068136
         (343 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15390.1  | chr5:4995333-4997255 FORWARD LENGTH=351            348   4e-96

>AT5G15390.1 | chr5:4995333-4997255 FORWARD LENGTH=351
          Length = 350

 Score =  348 bits (892), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 171/264 (64%), Positives = 195/264 (73%), Gaps = 1/264 (0%)

Query: 72  AGRGRIDRLMKLQRRADGDFPPGGAGRRWFPYLDAFRAAGGVELTSREVLEVLEPHIMXX 131
             RG    LMK++RR       G     WFPY D FR  G V L+SREVLE + PH+M  
Sbjct: 81  TNRGEASSLMKMERRCSLSNGEGDCRGSWFPYEDRFRC-GEVHLSSREVLEAVSPHMMEE 139

Query: 132 XXXXXXXXXXXXSYSVCLVVEGLSDFGNVSAAFRSADALGVQSVHVISCDNNKRYRDNRH 191
                       SYSVCLVVEGLSDFGN+SAAFRSADALG+QSVHV+SCD++KRY  NRH
Sbjct: 140 RTDRFRRVVENRSYSVCLVVEGLSDFGNISAAFRSADALGIQSVHVVSCDSSKRYNGNRH 199

Query: 192 VSMGAEKWLDIELWSSTAECFDALKKRGYRIATTYLGNDSVCVYDMDWSQPTAIVVGNEL 251
           VSMGAEKWLDIE W +  ECF  LK RGYRIATT+LG D+V +YDMDWS PTAIVVGNE 
Sbjct: 200 VSMGAEKWLDIEFWDTPKECFKVLKSRGYRIATTHLGMDTVSIYDMDWSCPTAIVVGNEG 259

Query: 252 MGISDDALKLSDLHCSVPMKGMVDSFNVSVAAGILMHHAVCDRISRIGHHGDLLPEESRI 311
            GISD+AL+LSDL CS+PM GMVDSFNVSVAAGILMHHAV DR +R+G HGDL   E  I
Sbjct: 260 RGISDEALELSDLRCSIPMNGMVDSFNVSVAAGILMHHAVSDRTTRLGSHGDLSEAEKEI 319

Query: 312 LLAEFYLRHRQSTAGIVHEYAKRK 335
           L+AEF LRH +S+  I +E+AKRK
Sbjct: 320 LMAEFSLRHSRSSICIAYEFAKRK 343



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,122,121
Number of extensions: 241612
Number of successful extensions: 405
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 244
Effective length of database: 8,392,385
Effective search space: 2047741940
Effective search space used: 2047741940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)