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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0592000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Gibberellin regulated protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0243) R2 : 0.0171
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.144 (0.0512) R2dN8 : 0.0221 R2N8 : 0.0171
σ : 0.458
deviance : 96.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.73 0.452 2.94 -0.105 0.00648 -0.366 0.23 1.2 0.132 5 1.052 12 -- --
93.92 0.455 2.93 -0.0548 0.0211 -0.251 0.101 -- 0.144 5.91 1.052 12 -- --
92.39 0.451 2.94 -0.114 0.0144 -0.344 -- 1.18 0.131 2.71 1.046 12 -- --
93.93 0.454 2.93 -0.0542 0.0265 -0.248 -- -- 0.143 3.71 1.1 12 -- --
92.4 0.45 2.94 -0.114 -- -0.35 -- 1.19 0.131 -- 1.006 12 -- --
95.83 0.459 2.93 -0.0259 0.101 -- 0.11 -- 0.14 4.25 -- -- -- --
95.86 0.458 2.93 -0.0271 0.101 -- -- -- 0.139 4.06 -- -- -- --
93.96 0.453 2.93 -0.0545 -- -0.26 -- -- 0.144 -- 1.006 12 -- --
94.01 0.454 2.93 -- 0.0269 -0.244 -- -- 0.149 3.75 1.073 12 -- --
96.42 0.459 2.93 -0.023 -- -- -- -- 0.142 -- -- -- -- --
95.88 0.458 2.93 -- 0.101 -- -- -- 0.142 4.06 -- -- -- --
94.04 0.453 2.93 -- -- -0.256 -- -- 0.15 -- 1.006 12 -- --
96.43 0.458 2.93 -- -- -- -- -- 0.144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.32 wind 1.0 10 < th dose dependent rect. 2 1
3 88.07 precipitation 0.1 30 < th dose independent rect. 3 23
4 88.07 precipitation 0.1 30 < th dose dependent rect. 3 23
5 88.11 wind 1.0 30 < th dose independent rect. 2 1
7 88.13 wind 1.0 30 < th dose independent rect. 24 3
10 88.19 atmosphere 1005.0 30 > th dose independent rect. 2 1
11 88.20 temperature 20.0 30 > th dose dependent rect. 2 1
13 88.21 atmosphere 1005.0 30 > th dose dependent rect. 2 1
14 88.22 temperature 20.0 30 > th dose independent rect. 2 1
20 88.24 humidity 90.0 30 > th dose independent rect. 2 1
27 88.26 temperature 15.0 30 > th dose independent rect. 3 23
29 88.26 humidity 60.0 30 > th dose dependent rect. 2 1
33 88.27 temperature 10.0 30 > th dose independent rect. 2 1
35 88.27 temperature 25.0 30 < th dose independent rect. 2 1
37 88.27 humidity 50.0 30 > th dose independent rect. 2 1
41 88.27 atmosphere 1010.0 30 < th dose independent rect. 2 1
43 88.27 radiation 1.0 30 < th dose independent rect. 2 1
48 88.27 precipitation 0.1 30 < th dose independent rect. 2 1
51 88.27 radiation 1.0 30 < th dose dependent rect. 2 1
56 88.27 precipitation 0.1 30 < th dose dependent rect. 2 1
62 88.37 atmosphere 1015.0 30 < th dose dependent rect. 2 1
64 88.38 temperature 30.0 30 < th dose dependent rect. 2 1
92 88.58 wind 1.0 30 < th dose dependent rect. 24 3
99 88.61 wind 1.0 30 > th dose independent rect. 2 1
117 88.62 wind 9.0 30 < th dose independent rect. 3 23
133 89.39 atmosphere 995.0 30 > th dose independent rect. 3 23
148 89.83 radiation 1.0 14400 < th dose dependent rect. 3 1
149 89.84 wind 9.0 1440 < th dose independent rect. 3 1
150 89.84 temperature 10.0 1440 > th dose independent rect. 3 1
153 89.84 temperature 30.0 1440 < th dose independent rect. 3 1
157 89.84 humidity 50.0 1440 > th dose independent rect. 3 1
166 89.84 atmosphere 995.0 1440 > th dose independent rect. 3 1
167 89.84 radiation 1.0 1440 < th dose independent rect. 3 1
188 89.84 temperature 10.0 1440 > th dose independent rect. 4 23
191 89.84 radiation 1.0 1440 < th dose dependent rect. 3 1
218 90.04 wind 1.0 30 < th dose dependent rect. 17 10
243 90.53 atmosphere 1015.0 30 < th dose independent rect. 3 23
253 90.70 wind 1.0 30 < th dose dependent rect. 10 17
257 90.78 wind 1.0 10 > th dose independent sin 16 NA
263 90.87 humidity 50.0 30 > th dose independent rect. 3 23
305 91.39 wind 1.0 10 < th dose independent sin 17 NA
351 91.78 humidity 90.0 90 < th dose independent rect. 2 1
352 91.78 temperature 10.0 30 > th dose dependent rect. 3 23
398 92.16 atmosphere 1015.0 1440 < th dose independent rect. 3 1
403 92.27 wind 1.0 30 > th dose independent rect. 3 23
407 92.34 humidity 90.0 10 < th dose independent rect. 24 10
425 92.43 temperature 25.0 10 > th dose independent rect. 23 10
427 92.45 temperature 25.0 10 > th dose independent rect. 23 8
451 92.60 humidity 90.0 10 < th dose independent rect. 24 7
468 92.64 temperature 25.0 10 > th dose independent sin 9 NA
483 92.64 humidity 90.0 10 > th dose independent rect. 2 10
492 92.66 temperature 30.0 30 < th dose independent rect. 3 23
506 92.74 humidity 90.0 10 > th dose independent rect. 2 8
534 92.80 humidity 90.0 10 > th dose independent rect. 24 12
540 92.82 wind 1.0 10 > th dose independent no NA NA
541 92.82 temperature 25.0 10 < th dose independent sin 9 NA
552 92.85 humidity 90.0 10 > th dose independent rect. 2 18
557 92.86 wind 1.0 10 > th dose independent rect. 16 15
559 92.86 humidity 90.0 10 < th dose independent rect. 24 21
563 92.87 temperature 25.0 10 > th dose independent rect. 21 12
584 92.91 temperature 25.0 270 > th dose dependent rect. 23 1
600 92.93 wind 1.0 10 > th dose independent rect. 15 23
609 92.94 humidity 90.0 10 > th dose independent rect. 24 20
631 92.98 radiation 30.0 10 < th dose dependent rect. 3 23
666 93.05 humidity 90.0 10 < th dose independent rect. 4 3
669 93.05 wind 1.0 10 > th dose independent rect. 12 22
675 93.06 temperature 25.0 10 > th dose independent rect. 18 15
690 93.08 temperature 25.0 10 > th dose independent rect. 3 7
693 93.08 atmosphere 1005.0 90 > th dose independent rect. 10 17
708 93.10 temperature 25.0 10 > th dose independent rect. 16 17
713 93.11 temperature 25.0 10 > th dose independent rect. 12 22
725 93.14 temperature 25.0 10 > th dose independent rect. 4 3
748 93.17 wind 9.0 10 < th dose dependent rect. 3 23
769 93.20 humidity 80.0 1440 > th dose dependent rect. 11 1
787 93.23 wind 1.0 10 > th dose independent rect. 12 19
789 93.23 temperature 20.0 90 > th dose dependent rect. 22 5
790 93.23 humidity 80.0 90 > th dose dependent rect. 7 6
795 93.24 humidity 90.0 10 > th dose independent sin 5 NA
796 93.24 temperature 25.0 270 > th dose independent rect. 23 1
828 93.28 temperature 25.0 10 > th dose dependent rect. 23 8
836 93.30 atmosphere 1005.0 90 > th dose independent rect. 7 20
863 93.35 wind 1.0 10 > th dose independent rect. 24 10
886 93.37 radiation 20.0 10 < th dose independent rect. 3 23
887 93.37 temperature 25.0 10 > th dose dependent rect. 23 1
901 93.38 precipitation 0.1 720 < th dose independent rect. 23 16
906 93.38 humidity 90.0 10 > th dose independent rect. 5 23
907 93.38 wind 1.0 30 > th dose dependent rect. 2 1
911 93.38 precipitation 0.1 720 < th dose dependent rect. 23 16
914 93.39 temperature 25.0 270 > th dose independent rect. 23 3
918 93.39 wind 1.0 10 > th dose independent rect. 23 23
930 93.41 wind 1.0 10 < th dose independent rect. 24 9
987 93.44 temperature 25.0 10 < th dose independent rect. 2 10
990 93.44 wind 1.0 10 > th dose independent rect. 15 19
997 93.45 precipitation 0.1 14400 > th dose independent rect. 18 1
998 93.45 precipitation 0.1 14400 < th dose independent rect. 18 1