BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0592000 Os07g0592000|AK107438
(102 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59845.1 | chr5:24111443-24111808 FORWARD LENGTH=90 57 1e-09
AT1G10588.1 | chr1:3501276-3501655 FORWARD LENGTH=91 52 5e-08
AT2G14900.1 | chr2:6404210-6405043 FORWARD LENGTH=109 52 9e-08
AT2G39540.1 | chr2:16500866-16501241 FORWARD LENGTH=88 51 9e-08
>AT5G59845.1 | chr5:24111443-24111808 FORWARD LENGTH=90
Length = 89
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 43 CDAKCQKRCS-LKVAGRCMGLCKMCCHDCGGCVPSGPYASKDECPCYRDMVSPKSRRPKC 101
C KC RCS RC+ C +CC C CVPSG Y +KDECPCYRDM + K KC
Sbjct: 30 CGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKG-TSKC 88
Query: 102 P 102
P
Sbjct: 89 P 89
>AT1G10588.1 | chr1:3501276-3501655 FORWARD LENGTH=91
Length = 90
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 41 SVCDAKCQKRCSL--KVAGRCMGLCKMCCHDCGGCVPSGPYASKDECPCYRDMVSPKSRR 98
S C KC RCS + C+ C +CC C CVPSG Y +KDECPCYRDM + K
Sbjct: 29 SACGGKCSVRCSKADRTHEECLEDCDICCQKCN-CVPSGTYGNKDECPCYRDMKNSKG-G 86
Query: 99 PKCP 102
KCP
Sbjct: 87 SKCP 90
>AT2G14900.1 | chr2:6404210-6405043 FORWARD LENGTH=109
Length = 108
Score = 51.6 bits (122), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 43 CDAKCQKRC-SLKVAGRCMGLCKMCCHDCGGCVPSGPYASKDECPCYRDMVSPKSRRPKC 101
C KC+ RC + RC+ C +CC DC CVPSG Y +K EC CYRD +S K PKC
Sbjct: 50 CGQKCEGRCKEAGMKDRCLKYCGICCKDCQ-CVPSGTYGNKHECACYRDKLSSKG-TPKC 107
Query: 102 P 102
P
Sbjct: 108 P 108
>AT2G39540.1 | chr2:16500866-16501241 FORWARD LENGTH=88
Length = 87
Score = 51.2 bits (121), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 41 SVCDAKCQKRCSLKVAGR---CMGLCKMCCHDCGGCVPSGPYASKDECPCYRDMVSPKSR 97
S C KC RCS AG+ C+ C +CC C CVPSG + KDECPCYRDM + K
Sbjct: 27 SSCGGKCNVRCS--KAGQHEECLKYCNICCQKCN-CVPSGTFGHKDECPCYRDMKNSKG- 82
Query: 98 RPKCP 102
KCP
Sbjct: 83 GSKCP 87
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.139 0.512
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,790,948
Number of extensions: 59017
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 13
Length of query: 102
Length of database: 11,106,569
Length adjustment: 72
Effective length of query: 30
Effective length of database: 9,132,617
Effective search space: 273978510
Effective search space used: 273978510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)