Os07g0587500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os07g0587500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.59 | 0.422 | 10.5 | 2.15 | 0.913 | -0.66 | -0.109 | 0.0211 | 0.629 | 2.22 | 25.75 | 333 | -- | -- |
| 80.59 | 0.418 | 10.5 | 2.14 | 0.916 | -0.66 | -0.107 | -- | 0.627 | 2.22 | 25.78 | 334 | -- | -- |
| 80.62 | 0.418 | 10.5 | 2.16 | 0.918 | -0.658 | -- | 0.0662 | 0.632 | 2.23 | 25.8 | 335 | -- | -- |
| 80.63 | 0.418 | 10.5 | 2.14 | 0.918 | -0.655 | -- | -- | 0.626 | 2.24 | 25.79 | 335 | -- | -- |
| 107.85 | 0.484 | 10.5 | 2.32 | -- | -1.02 | -- | 0.0881 | 0.76 | -- | 25.8 | 137 | -- | -- |
| 96.92 | 0.462 | 10.6 | 1.96 | 1.31 | -- | 0.229 | -- | 0.389 | 3.36 | -- | -- | -- | -- |
| 97.09 | 0.461 | 10.6 | 1.96 | 1.31 | -- | -- | -- | 0.388 | 3.34 | -- | -- | -- | -- |
| 107.58 | 0.483 | 10.5 | 2.27 | -- | -1.01 | -- | -- | 0.763 | -- | 25.79 | 142 | -- | -- |
| 195.65 | 0.651 | 10.6 | -- | 1.18 | -0.246 | -- | -- | 0.242 | 3.04 | 26.05 | 320 | -- | -- |
| 193.65 | 0.65 | 10.6 | 2.01 | -- | -- | -- | -- | 0.422 | -- | -- | -- | -- | -- |
| 198.07 | 0.658 | 10.6 | -- | 1.35 | -- | -- | -- | 0.17 | 3.34 | -- | -- | -- | -- |
| 240.79 | 0.723 | 10.6 | -- | -- | -0.832 | -- | -- | 0.455 | -- | 25.8 | 131 | -- | -- |
| 300.53 | 0.809 | 10.6 | -- | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.46 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 2 | 73.59 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 5 | 74.41 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 19 | 75.71 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 28 | 76.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 34 | 76.53 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 37 | 76.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 44 | 76.89 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 50 | 77.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 53 | 77.04 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 3 |
| 55 | 77.09 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 61 | 77.16 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 70 | 77.37 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 71 | 77.39 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 6 |
| 80 | 77.51 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 90 | 77.68 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 91 | 77.69 | temperature | 25.0 | 90 | < th | dose independent | rect. | 17 | 4 |
| 112 | 78.08 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 8 |
| 131 | 78.42 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 152 | 78.57 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 2 |
| 157 | 78.59 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 161 | 78.62 | temperature | 25.0 | 10 | < th | dose independent | rect. | 14 | 8 |
| 167 | 78.68 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 175 | 78.74 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 1 |
| 206 | 79.10 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 6 |
| 221 | 79.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 226 | 79.29 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 230 | 79.33 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 11 |
| 239 | 79.39 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 9 |
| 251 | 79.45 | temperature | 25.0 | 10 | < th | dose independent | rect. | 12 | 10 |
| 270 | 79.54 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 12 |
| 280 | 79.57 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 5 |
| 293 | 79.65 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 303 | 79.71 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 304 | 79.71 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 309 | 79.73 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 312 | 79.75 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 336 | 79.89 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 342 | 79.91 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 357 | 79.96 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 19 |
| 381 | 80.06 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 388 | 80.09 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 399 | 80.13 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 400 | 80.13 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 473 | 80.45 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 479 | 80.47 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 9 |
| 556 | 80.64 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 12 |
| 559 | 80.65 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 571 | 80.70 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 592 | 80.78 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 594 | 80.78 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 609 | 80.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 611 | 80.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 630 | 80.96 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 631 | 80.96 | radiation | 1.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 695 | 81.08 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 739 | 81.23 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 764 | 81.29 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 16 | 19 |
| 784 | 81.38 | temperature | 25.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 858 | 81.66 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 962 | 81.95 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 981 | 82.00 | temperature | 25.0 | 90 | < th | dose independent | rect. | 13 | 22 |