Os07g0587100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os07g0587100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.42 | 0.212 | 10.6 | -0.0495 | 0.415 | -0.361 | -0.401 | 0.573 | -0.01 | 7.28 | 19.2 | 1628 | -- | -- |
| 20.91 | 0.213 | 10.5 | 0.0169 | 0.438 | -0.407 | -0.465 | -- | -0.00399 | 7.46 | 19.19 | 2036 | -- | -- |
| 20.84 | 0.213 | 10.6 | -0.0652 | 0.417 | -0.373 | -- | 0.575 | -0.0118 | 7.13 | 19.1 | 1626 | -- | -- |
| 21.24 | 0.215 | 10.5 | 0.00455 | 0.381 | -0.602 | -- | -- | 0.00819 | 7.19 | 18.4 | 1570 | -- | -- |
| 29.58 | 0.253 | 10.6 | -0.0218 | -- | -0.483 | -- | 0.737 | 0.00969 | -- | 18.2 | 1570 | -- | -- |
| 23.91 | 0.229 | 10.5 | 0.186 | 0.419 | -- | -0.474 | -- | 0.0781 | 7.34 | -- | -- | -- | -- |
| 24.49 | 0.232 | 10.5 | 0.174 | 0.42 | -- | -- | -- | 0.0786 | 7.15 | -- | -- | -- | -- |
| 29.92 | 0.255 | 10.6 | -0.00805 | -- | -0.691 | -- | -- | 0.00958 | -- | 18.24 | 1538 | -- | -- |
| 21.19 | 0.214 | 10.5 | -- | 0.403 | -0.647 | -- | -- | 0.00949 | 7.24 | 18.3 | 1551 | -- | -- |
| 33.82 | 0.272 | 10.5 | 0.182 | -- | -- | -- | -- | 0.086 | -- | -- | -- | -- | -- |
| 25.3 | 0.235 | 10.5 | -- | 0.422 | -- | -- | -- | 0.0592 | 7.13 | -- | -- | -- | -- |
| 29.92 | 0.255 | 10.6 | -- | -- | -0.685 | -- | -- | 0.0109 | -- | 18.23 | 1537 | -- | -- |
| 34.7 | 0.275 | 10.5 | -- | -- | -- | -- | -- | 0.0658 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 2 | 19.72 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 17 |
| 6 | 19.83 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 6 |
| 10 | 19.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 11 | 19.87 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |
| 17 | 19.91 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 8 |
| 28 | 20.00 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 6 |
| 33 | 20.01 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 34 | 20.02 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 18 | 7 |
| 45 | 20.05 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 20 | 5 |
| 58 | 20.09 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 21 | 3 |
| 76 | 20.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 87 | 20.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 90 | 20.13 | temperature | 20 | 30 | > th | dose independent | rect. | 12 | 23 |
| 95 | 20.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 97 | 20.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 99 | 20.15 | temperature | 20 | 30 | < th | dose independent | sin | 13 | NA |
| 113 | 20.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 134 | 20.19 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 159 | 20.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 192 | 20.25 | radiation | 40 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 208 | 20.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 212 | 20.27 | radiation | 40 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 242 | 20.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 250 | 20.30 | radiation | 40 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 253 | 20.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 267 | 20.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 268 | 20.32 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 271 | 20.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 279 | 20.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 289 | 20.34 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 331 | 20.36 | radiation | 40 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 341 | 20.37 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 441 | 20.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 457 | 20.46 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 473 | 20.48 | wind | 1 | 90 | > th | dose independent | rect. | 22 | 14 |
| 474 | 20.48 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 14 |
| 481 | 20.49 | temperature | 20 | 30 | > th | dose independent | sin | 13 | NA |
| 501 | 20.50 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 532 | 20.51 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 588 | 20.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 613 | 20.55 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 2 |
| 634 | 20.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 722 | 20.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 3 |
| 744 | 20.60 | radiation | 1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 757 | 20.61 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 13 |
| 770 | 20.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 771 | 20.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 782 | 20.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 4 |
| 829 | 20.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 831 | 20.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 18 |
| 851 | 20.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 882 | 20.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 941 | 20.66 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 7 |