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Os07g0585000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 calcium/lipid-binding region, CaLB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.02) R2 : 0.0639
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.234 (0.042) R2dN8 : 0.0825 R2N8 : 0.0639
σ : 0.376
deviance : 64.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35 0.278 12.7 0.58 0.65 0.51 1.14 -0.588 -0.141 18.4 76.59 934 -- --
35.51 0.278 12.7 0.564 0.651 0.515 1.25 -- -0.145 18.5 76.96 935 -- --
37.71 0.286 12.7 0.568 0.668 0.441 -- -0.727 -0.146 17.8 78 883 -- --
39.08 0.291 12.7 0.511 0.643 0.403 -- -- -0.152 17.8 76.63 926 -- --
53.08 0.341 12.7 0.422 -- -0.225 -- 0.338 -0.182 -- 78 883 -- --
40.21 0.297 12.7 0.479 0.567 -- 0.914 -- -0.174 17.5 -- -- -- --
41.71 0.302 12.7 0.478 0.578 -- -- -- -0.169 16.9 -- -- -- --
53.61 0.341 12.7 0.509 -- 0.638 -- -- -0.151 -- 77 1285 -- --
45.66 0.315 12.7 -- 0.531 0.377 -- -- -0.208 17 77 1318 -- --
59.33 0.36 12.7 0.457 -- -- -- -- -0.184 -- -- -- -- --
47.74 0.323 12.7 -- 0.569 -- -- -- -0.222 16.9 -- -- -- --
58.74 0.358 12.7 -- -- -0.235 -- -- -0.226 -- 77.51 1285 -- --
64.83 0.376 12.7 -- -- -- -- -- -0.234 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.11 humidity 90.0 720 < th dose dependent rect. 18 5
4 33.30 humidity 90.0 720 < th dose dependent rect. 19 2
12 33.72 humidity 70.0 720 > th dose independent rect. 19 8
18 33.90 humidity 90.0 720 < th dose dependent rect. 17 11
19 33.90 humidity 90.0 720 < th dose dependent rect. 17 13
25 33.96 radiation 30.0 14400 < th dose independent rect. 17 13
28 34.02 radiation 30.0 14400 < th dose independent rect. 17 10
31 34.07 temperature 30.0 720 < th dose independent rect. 17 9
34 34.11 humidity 80.0 720 < th dose independent rect. 12 10
36 34.14 radiation 30.0 90 < th dose dependent rect. 11 16
37 34.15 radiation 30.0 14400 < th dose independent rect. 17 8
56 34.29 temperature 20.0 90 > th dose independent rect. 3 14
62 34.30 humidity 70.0 720 > th dose independent rect. 18 15
63 34.30 humidity 80.0 720 < th dose independent rect. 12 15
68 34.32 humidity 70.0 720 > th dose independent rect. 19 1
73 34.34 humidity 80.0 720 < th dose independent rect. 15 7
74 34.35 humidity 80.0 720 < th dose independent rect. 16 5
84 34.38 humidity 80.0 720 < th dose independent rect. 12 19
92 34.41 humidity 70.0 720 > th dose independent sin 11 NA
113 34.49 humidity 80.0 720 < th dose independent sin 16 NA
116 34.50 wind 7.0 90 < th dose independent rect. 3 14
120 34.50 humidity 90.0 720 < th dose dependent sin 14 NA
121 34.51 temperature 30.0 720 < th dose independent rect. 17 2
124 34.51 wind 9.0 90 < th dose dependent rect. 3 8
130 34.53 radiation 10.0 90 < th dose independent rect. 11 16
136 34.55 radiation 1.0 720 > th dose independent rect. 11 8
143 34.55 precipitation 0.1 90 < th dose independent rect. 3 14
149 34.55 precipitation 0.1 90 < th dose dependent rect. 3 14
152 34.57 temperature 20.0 90 > th dose independent rect. 23 16
173 34.63 temperature 20.0 10 > th dose independent rect. 24 16
188 34.66 temperature 25.0 270 < th dose independent rect. 24 9
191 34.66 temperature 20.0 10 > th dose independent rect. 3 14
253 34.79 wind 7.0 720 < th dose independent rect. 14 13
263 34.81 temperature 10.0 90 > th dose dependent rect. 23 16
266 34.82 radiation 1.0 720 > th dose independent sin 16 NA
267 34.83 wind 5.0 90 < th dose independent rect. 3 8
273 34.83 radiation 1.0 90 < th dose dependent rect. 5 22
276 34.84 precipitation 0.1 720 < th dose independent rect. 17 22
278 34.84 wind 9.0 90 < th dose dependent rect. 3 14
279 34.84 precipitation 0.1 720 < th dose dependent rect. 17 22
295 34.89 wind 1.0 30 > th dose independent sin 1 NA
301 34.89 radiation 20.0 90 < th dose dependent rect. 15 12
304 34.90 atmosphere 995.0 90 > th dose independent rect. 17 10
306 34.90 radiation 40.0 90 < th dose dependent rect. 17 10
307 34.91 wind 9.0 90 < th dose independent rect. 17 10
308 34.91 temperature 10.0 90 > th dose independent rect. 17 10
309 34.91 radiation 20.0 90 < th dose independent rect. 17 10
315 34.91 atmosphere 1015.0 90 < th dose independent rect. 3 14
318 34.92 humidity 90.0 270 < th dose independent rect. 7 8
325 34.93 precipitation 0.1 720 < th dose independent rect. 17 7
326 34.93 precipitation 0.1 90 < th dose independent rect. 3 8
329 34.93 precipitation 0.1 720 < th dose dependent rect. 17 7
330 34.93 precipitation 0.1 90 < th dose dependent rect. 3 8
352 34.96 temperature 10.0 90 > th dose dependent rect. 3 14
360 34.97 wind 1.0 270 > th dose independent rect. 9 16
391 34.99 temperature 10.0 10 > th dose dependent rect. 24 16
393 35.00 temperature 15.0 270 > th dose independent rect. 7 8
396 35.00 temperature 30.0 720 < th dose independent rect. 17 16
404 35.01 radiation 1.0 90 < th dose independent rect. 5 22
410 35.02 humidity 50.0 90 > th dose independent rect. 17 10
411 35.02 wind 7.0 270 < th dose independent rect. 22 15
420 35.03 radiation 10.0 90 < th dose independent rect. 15 12
427 35.04 atmosphere 995.0 90 > th dose independent rect. 3 14
439 35.06 temperature 15.0 90 > th dose independent rect. 3 8
460 35.07 wind 5.0 270 < th dose independent rect. 14 17
462 35.07 radiation 10.0 10 < th dose dependent rect. 6 22
463 35.08 wind 1.0 30 > th dose independent sin 9 NA
470 35.09 precipitation 0.1 720 < th dose independent sin 12 NA
475 35.09 precipitation 0.1 720 < th dose dependent sin 12 NA
484 35.10 wind 5.0 270 < th dose independent rect. 17 14
486 35.10 atmosphere 1005.0 270 > th dose independent rect. 15 16
487 35.10 precipitation 0.1 720 < th dose independent rect. 12 17
491 35.10 precipitation 0.1 720 < th dose dependent rect. 12 17
514 35.12 radiation 40.0 90 < th dose independent rect. 3 8
531 35.13 precipitation 0.1 720 < th dose independent rect. 7 16
538 35.13 precipitation 0.1 720 < th dose dependent rect. 7 16
546 35.14 temperature 10.0 10 > th dose dependent rect. 3 15
548 35.14 wind 9.0 270 < th dose dependent rect. 15 16
575 35.17 wind 7.0 270 < th dose independent rect. 7 7
580 35.17 atmosphere 995.0 90 > th dose independent rect. 3 8
581 35.17 atmosphere 1015.0 90 < th dose independent rect. 3 8
584 35.17 temperature 10.0 90 > th dose independent rect. 11 16
587 35.17 temperature 10.0 270 > th dose dependent rect. 6 8
604 35.19 wind 5.0 270 < th dose independent rect. 1 9
618 35.20 wind 1.0 30 > th dose independent rect. 24 16
619 35.20 wind 9.0 90 < th dose independent rect. 11 16
629 35.21 wind 5.0 720 < th dose independent rect. 18 1
630 35.21 wind 7.0 270 < th dose independent rect. 13 9
633 35.21 humidity 50.0 270 > th dose independent rect. 14 17
649 35.22 precipitation 0.1 270 < th dose independent rect. 15 16
653 35.22 wind 9.0 270 < th dose dependent rect. 1 14
656 35.22 precipitation 0.1 270 < th dose dependent rect. 15 16
661 35.23 precipitation 0.1 270 < th dose independent rect. 1 9
663 35.23 precipitation 0.1 270 < th dose dependent rect. 1 9
698 35.26 humidity 50.0 720 > th dose dependent rect. 17 4
736 35.29 wind 7.0 720 < th dose independent rect. 15 2
824 35.33 precipitation 0.1 10 < th dose independent rect. 3 14
835 35.33 precipitation 0.1 10 < th dose dependent rect. 3 14
843 35.34 wind 5.0 720 < th dose independent rect. 17 6
854 35.34 precipitation 0.1 90 < th dose independent rect. 3 16
866 35.34 precipitation 0.1 90 < th dose dependent rect. 3 16
917 35.37 wind 1.0 270 > th dose independent rect. 7 8
945 35.38 radiation 1.0 10 < th dose independent rect. 6 22
953 35.39 atmosphere 1005.0 720 > th dose independent rect. 20 3
956 35.39 precipitation 0.1 90 < th dose independent rect. 17 10
969 35.39 wind 9.0 720 < th dose dependent rect. 15 4
970 35.39 precipitation 0.1 90 < th dose dependent rect. 17 10
980 35.40 wind 1.0 270 > th dose independent rect. 4 10
984 35.40 temperature 30.0 720 > th dose dependent rect. 18 1
985 35.40 temperature 10.0 720 > th dose dependent rect. 3 2
996 35.40 temperature 10.0 270 > th dose dependent rect. 14 9