Os07g0581300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0581300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.46 | 0.276 | 10.2 | 0.347 | 0.368 | -0.643 | -0.119 | -0.36 | 0.237 | 1.53 | 26.19 | 12 | -- | -- |
| 34.35 | 0.273 | 10.2 | 0.375 | 0.381 | -0.693 | -0.0785 | -- | 0.234 | 1.6 | 26.7 | 9 | -- | -- |
| 34.4 | 0.273 | 10.2 | 0.371 | 0.375 | -0.663 | -- | -0.188 | 0.232 | 1.52 | 26.65 | 10 | -- | -- |
| 34.37 | 0.273 | 10.2 | 0.379 | 0.381 | -0.689 | -- | -- | 0.234 | 1.65 | 26.7 | 7 | -- | -- |
| 39.92 | 0.294 | 10.2 | 0.466 | -- | -0.977 | -- | 0.185 | 0.292 | -- | 25.49 | 7 | -- | -- |
| 40.9 | 0.3 | 10.2 | 0.295 | 0.582 | -- | 0.125 | -- | 0.221 | 2.12 | -- | -- | -- | -- |
| 40.96 | 0.3 | 10.2 | 0.291 | 0.582 | -- | -- | -- | 0.221 | 2.09 | -- | -- | -- | -- |
| 39.93 | 0.294 | 10.2 | 0.442 | -- | -0.97 | -- | -- | 0.282 | -- | 25.49 | 7 | -- | -- |
| 38.05 | 0.287 | 10.2 | -- | 0.411 | -0.62 | -- | -- | 0.194 | 1.67 | 26.8 | 9 | -- | -- |
| 61.27 | 0.366 | 10.2 | 0.315 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 43.2 | 0.307 | 10.2 | -- | 0.588 | -- | -- | -- | 0.188 | 2.1 | -- | -- | -- | -- |
| 44.97 | 0.313 | 10.2 | -- | -- | -0.916 | -- | -- | 0.23 | -- | 25.49 | 7 | -- | -- |
| 63.89 | 0.373 | 10.2 | -- | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.73 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 5 | 32.99 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 7 | 33.02 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 13 | 33.10 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 25 | 33.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 26 | 33.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 45 | 33.64 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 51 | 33.69 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 16 |
| 55 | 33.70 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 71 | 33.86 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 81 | 33.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 84 | 33.90 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 89 | 33.91 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 112 | 33.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 122 | 34.02 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 142 | 34.08 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 214 | 34.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 289 | 34.36 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 349 | 34.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 414 | 34.58 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 21 |
| 469 | 34.67 | radiation | 40 | 270 | < th | dose dependent | sin | 4 | NA |
| 504 | 34.72 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 588 | 34.81 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 765 | 34.99 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 775 | 34.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 802 | 35.03 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 807 | 35.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 862 | 35.07 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 892 | 35.09 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 952 | 35.13 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 963 | 35.15 | temperature | 30 | 90 | < th | dose independent | sin | 3 | NA |
| 968 | 35.15 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 981 | 35.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 991 | 35.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |