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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0576500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Indole-3-acetic acid-amido synthetase GH3.4 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 4) (AtGH3-4) (CF4-like protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0301) R2 : 9.97e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00428 (0.0634) R2dN8 : 1.29e-05 R2N8 : 9.97e-06
σ : 0.567
deviance : 147.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
119.67 0.514 3.34 -0.351 0.534 0.592 0.329 -0.534 -0.0972 6.83 25.35 1310 -- --
119.7 0.51 3.32 -0.198 0.534 0.523 0.298 -- -0.0408 6.86 26.01 1294 -- --
119.87 0.51 3.34 -0.37 0.537 0.591 -- -0.622 -0.0856 6.88 25.95 1308 -- --
119.96 0.51 3.32 -0.199 0.536 0.522 -- -- -0.0424 6.87 26 1305 -- --
134.83 0.541 3.35 -0.301 -- 0.598 -- -0.361 -0.0833 -- 25.29 1328 -- --
131.02 0.537 3.31 -0.0337 0.557 -- 0.463 -- -0.00781 6.24 -- -- -- --
131.53 0.537 3.31 -0.0279 0.56 -- -- -- -0.00916 6.35 -- -- -- --
134.87 0.541 3.33 -0.203 -- 0.56 -- -- -0.0541 -- 25.4 1327 -- --
120.99 0.512 3.32 -- 0.527 0.515 -- -- -0.0237 6.92 26.1 1287 -- --
147.8 0.568 3.32 -0.0132 -- -- -- -- 0.00282 -- -- -- -- --
131.56 0.537 3.31 -- 0.559 -- -- -- -0.00606 6.35 -- -- -- --
135.84 0.543 3.32 -- -- 0.503 -- -- -0.00809 -- 26.1 1326 -- --
147.8 0.567 3.32 -- -- -- -- -- 0.00428 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.13 wind 1 90 < th dose dependent rect. 4 1
2 114.18 wind 1 90 < th dose independent rect. 4 1
4 115.51 wind 1 90 < th dose independent rect. 2 3
6 115.67 temperature 25 720 > th dose dependent rect. 20 3
7 115.77 temperature 25 720 > th dose dependent rect. 20 1
8 115.78 humidity 50 1440 < th dose independent rect. 16 1
9 115.86 humidity 50 1440 < th dose dependent rect. 16 1
11 115.96 temperature 30 1440 > th dose dependent rect. 18 1
25 116.00 humidity 70 720 < th dose independent rect. 19 1
38 116.14 wind 1 90 < th dose dependent rect. 4 6
55 116.42 humidity 70 720 < th dose dependent rect. 19 1
67 116.45 humidity 70 1440 > th dose independent rect. 19 1
68 116.46 temperature 25 720 > th dose dependent rect. 22 1
70 116.47 humidity 70 1440 > th dose independent rect. 19 8
72 116.50 humidity 70 1440 > th dose independent rect. 19 6
74 116.50 humidity 70 1440 > th dose independent rect. 19 10
76 116.53 humidity 70 1440 > th dose independent rect. 19 12
78 116.55 wind 1 90 < th dose dependent rect. 4 4
102 116.76 wind 1 90 < th dose dependent rect. 4 13
126 117.03 humidity 70 14400 < th dose independent rect. 19 13
136 117.22 wind 1 90 > th dose independent rect. 21 10
162 117.30 wind 1 90 < th dose independent rect. 4 6
164 117.31 wind 1 90 < th dose dependent rect. 2 3
194 117.67 radiation 10 1440 < th dose dependent rect. 18 2
201 117.75 humidity 50 1440 > th dose independent rect. 16 1
218 117.79 radiation 1 1440 < th dose dependent rect. 18 9
219 117.80 radiation 1 1440 < th dose dependent rect. 18 11
222 117.85 wind 1 90 < th dose independent rect. 2 8
226 117.87 humidity 70 14400 < th dose dependent rect. 18 1
228 117.87 radiation 1 1440 < th dose dependent rect. 18 7
234 117.92 humidity 70 14400 < th dose dependent rect. 18 14
236 117.94 temperature 10 720 > th dose dependent rect. 17 10
243 118.03 humidity 90 720 < th dose dependent rect. 17 6
249 118.08 temperature 10 720 > th dose dependent rect. 17 8
251 118.12 humidity 90 14400 > th dose dependent rect. 21 4
256 118.16 humidity 60 720 > th dose dependent rect. 18 5
259 118.19 wind 3 10 < th dose dependent rect. 2 9
265 118.22 humidity 70 14400 < th dose independent rect. 18 4
287 118.26 temperature 20 90 > th dose dependent rect. 4 1
305 118.30 humidity 90 14400 > th dose dependent rect. 22 2
316 118.33 wind 1 90 < th dose independent rect. 4 13
329 118.36 humidity 70 14400 > th dose independent rect. 19 13
341 118.48 temperature 15 270 > th dose dependent rect. 24 9
349 118.53 wind 1 90 < th dose dependent rect. 2 8
354 118.56 wind 1 10 < th dose independent rect. 2 6
387 118.64 temperature 30 720 < th dose dependent rect. 19 4
392 118.67 wind 1 10 < th dose independent rect. 2 4
445 118.81 wind 1 90 < th dose dependent rect. 4 23
446 118.82 temperature 20 90 > th dose independent rect. 4 1
451 118.84 temperature 30 720 < th dose dependent rect. 19 2
487 118.97 temperature 30 720 < th dose dependent rect. 18 7
489 118.98 humidity 90 14400 < th dose independent rect. 18 7
507 119.00 humidity 90 14400 > th dose independent rect. 21 3
514 119.04 humidity 90 14400 > th dose independent rect. 22 1
523 119.07 humidity 90 14400 < th dose independent rect. 20 4
526 119.08 radiation 20 14400 < th dose independent rect. 3 3
544 119.11 humidity 90 14400 < th dose independent rect. 21 2
573 119.15 humidity 90 90 > th dose dependent rect. 4 1
582 119.17 humidity 60 14400 > th dose independent rect. 17 3
595 119.18 humidity 60 14400 > th dose independent rect. 17 10
617 119.20 humidity 60 14400 > th dose independent rect. 17 8
644 119.25 atmosphere 1005 90 > th dose independent rect. 4 1
673 119.27 humidity 90 14400 > th dose dependent sin 14 NA
675 119.27 humidity 70 720 > th dose dependent rect. 19 2
698 119.31 wind 3 43200 < th dose independent rect. 2 2
714 119.32 humidity 90 90 > th dose independent rect. 4 1
732 119.35 humidity 70 1440 < th dose independent sin 12 NA
779 119.42 temperature 20 90 > th dose dependent rect. 2 7
798 119.43 temperature 30 1440 < th dose independent rect. 14 18
803 119.44 humidity 90 14400 < th dose independent sin 16 NA
813 119.45 temperature 30 1440 < th dose independent rect. 14 6
815 119.45 temperature 30 1440 < th dose independent rect. 14 13
817 119.45 temperature 25 1440 > th dose dependent rect. 7 1
824 119.46 temperature 30 1440 < th dose independent rect. 14 11
864 119.49 humidity 90 14400 > th dose independent rect. 18 9
866 119.49 humidity 90 14400 < th dose independent rect. 10 17
870 119.50 wind 1 10 > th dose independent sin 4 NA
903 119.54 temperature 30 1440 > th dose independent rect. 14 5
974 119.56 temperature 25 720 > th dose independent rect. 17 7