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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0570500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase M16, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.78 (0.0273) R2 : 0.198
β1 : -0.233 (0.102) R2dD : 0.00995 R2D : -0.00825
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.26 (0.31) R2dE : 0.352 R2E : -0.0131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20 (2.47) R2dD*E : 0.215 R2D*E : -0.159
γ1 : 0.0153 (0.0581) R2dN8 : 0.000164 R2N8 : -0.00124
σ : 0.512
deviance : 119.32
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 30
memory length : 10
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
118.64 0.507 2.78 -0.228 0.104 3.24 -0.106 -20 0.015 9.5 30 10 14 1
135.86 0.547 2.76 -0.0416 0.104 1.56 -0.14 -- 0.0116 9.71 30 10 14 1
118.68 0.511 2.78 -0.231 0.104 3.24 -- -20 0.0149 9.72 30 10 14 1
135.93 0.547 2.76 -0.0469 0.104 1.56 -- -- 0.0113 9.7 30.01 11 14 1.02
119.32 0.512 2.78 -0.233 -- 3.26 -- -20 0.0153 -- 30 10 14 1
147.62 0.57 2.76 -0.0241 0.138 -- -0.0677 -- -0.00676 11.4 -- -- -- --
147.64 0.569 2.76 -0.0267 0.138 -- -- -- -0.00695 11.5 -- -- -- --
136.29 0.544 2.78 -0.0519 -- 1.58 -- -- 0.0742 -- 29.78 24 13.9 1.75
135.99 0.546 2.76 -- 0.104 1.55 -- -- 0.0165 9.74 30.03 11 14 0.955
148.83 0.57 2.77 -0.0305 -- -- -- -- -0.00844 -- -- -- -- --
147.65 0.568 2.76 -- 0.138 -- -- -- -0.00397 11.5 -- -- -- --
135.69 0.543 2.76 -- -- 1.57 -- -- 0.0225 -- 29.8 26 13.9 1.72
148.86 0.569 2.76 -- -- -- -- -- -0.00506 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.64 temperature 30 10 > th dose independent rect. 14 1
6 122.82 wind 1 90 < th dose dependent rect. 13 1
13 124.74 wind 1 90 < th dose independent rect. 13 1
16 126.86 temperature 30 10 > th dose independent rect. 13 22
39 134.99 wind 1 30 < th dose dependent rect. 10 4
45 136.97 temperature 30 10 > th dose dependent rect. 10 1
52 138.65 temperature 25 10 > th dose dependent rect. 13 1
53 138.66 radiation 10 10 < th dose dependent rect. 12 1
55 138.72 temperature 30 10 > th dose independent rect. 9 1
119 138.90 radiation 10 10 < th dose independent rect. 12 1
174 140.10 radiation 20 10 > th dose independent rect. 13 1
272 141.28 wind 7 10 > th dose independent rect. 12 1
281 141.60 atmosphere 1005 10 < th dose independent rect. 13 1
297 141.81 atmosphere 1010 720 > th dose dependent rect. 24 1
299 141.87 radiation 40 1440 > th dose dependent rect. 15 1
329 142.04 radiation 40 1440 > th dose independent rect. 15 1
366 142.31 atmosphere 1010 1440 > th dose dependent rect. 12 1
370 142.37 temperature 30 10 > th dose independent rect. 9 7
462 142.96 humidity 70 10 < th dose independent rect. 13 1
525 143.31 atmosphere 1015 1440 < th dose independent rect. 12 1
554 143.40 atmosphere 1015 1440 > th dose independent rect. 12 1
597 143.52 radiation 40 10 > th dose dependent rect. 10 1
602 143.58 temperature 30 10 > th dose independent sin 2 NA
603 143.59 temperature 30 10 < th dose independent rect. 7 11
607 143.62 atmosphere 1015 1440 < th dose independent rect. 12 7
630 143.76 humidity 90 10 < th dose dependent rect. 13 1
643 143.83 atmosphere 1000 10 > th dose independent rect. 13 1
645 143.83 temperature 30 10 < th dose independent rect. 21 23
701 143.95 temperature 25 10 > th dose dependent rect. 13 22
703 143.97 radiation 20 10 > th dose independent rect. 13 3
705 143.98 atmosphere 995 43200 < th dose independent rect. 12 1
710 143.98 atmosphere 995 43200 < th dose dependent rect. 12 1
715 143.99 temperature 10 90 > th dose dependent rect. 3 11
717 144.01 atmosphere 995 43200 > th dose independent rect. 13 1
744 144.06 temperature 30 10 > th dose independent sin 16 NA
753 144.08 temperature 30 10 > th dose independent no NA NA
895 144.13 wind 9 43200 > th dose dependent rect. 10 7
899 144.15 temperature 30 10 < th dose independent sin 2 NA
903 144.16 wind 9 43200 > th dose independent rect. 1 13
912 144.18 wind 9 43200 > th dose independent rect. 4 10
921 144.20 wind 9 43200 > th dose independent rect. 7 7
931 144.22 wind 3 43200 > th dose independent rect. 2 1
932 144.22 wind 9 43200 > th dose independent rect. 21 17
933 144.22 temperature 30 10 < th dose independent rect. 23 23
935 144.23 radiation 10 43200 > th dose independent rect. 11 1
938 144.23 wind 9 43200 > th dose dependent rect. 10 4
950 144.27 wind 9 43200 > th dose independent rect. 23 18
955 144.28 wind 9 43200 > th dose independent rect. 1 16
957 144.29 wind 9 43200 > th dose independent sin 3 NA
959 144.29 radiation 40 10 > th dose independent rect. 14 1