BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0570500 Os07g0570500|J065206E10
(139 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41790.1 | chr2:17429453-17436110 REVERSE LENGTH=971 181 1e-46
AT1G06900.1 | chr1:2115155-2120635 REVERSE LENGTH=1025 94 2e-20
AT3G57470.2 | chr3:21269428-21275400 REVERSE LENGTH=892 84 3e-17
AT3G02090.2 | chr3:365624-368534 FORWARD LENGTH=536 54 2e-08
>AT2G41790.1 | chr2:17429453-17436110 REVERSE LENGTH=971
Length = 970
Score = 181 bits (459), Expect = 1e-46, Method: Composition-based stats.
Identities = 85/115 (73%), Positives = 94/115 (81%)
Query: 25 GEVEITKPRNDKRGYRRVVLPNALECLVISDPDTDKAAASMNVSVGYFCDPEGLPGLAHF 84
G VEI KPR D R YR +VL N L+ L+ISDPDTDK AASM+VSVG F DP+GL GLAHF
Sbjct: 11 GGVEILKPRTDNREYRMIVLKNLLQVLLISDPDTDKCAASMSVSVGSFSDPQGLEGLAHF 70
Query: 85 LEHMLFYASEKYPIEDSYSKYIAEHGGSRNAFTSREHTNFFFDVNNDCLDDALDR 139
LEHMLFYASEKYP EDSYSKYI EHGGS NA+T+ E TN+ FDVN DC D+ALDR
Sbjct: 71 LEHMLFYASEKYPEEDSYSKYITEHGGSTNAYTASEETNYHFDVNADCFDEALDR 125
>AT1G06900.1 | chr1:2115155-2120635 REVERSE LENGTH=1025
Length = 1024
Score = 94.4 bits (233), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 57/85 (67%)
Query: 55 DPDTDKAAASMNVSVGYFCDPEGLPGLAHFLEHMLFYASEKYPIEDSYSKYIAEHGGSRN 114
D T KAAA+M VS+G F DP GLAHFLEHMLF S ++P E+ Y Y+++HGGS N
Sbjct: 101 DHQTKKAAAAMCVSMGSFLDPPEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSN 160
Query: 115 AFTSREHTNFFFDVNNDCLDDALDR 139
A+T EHT + F+V + L AL R
Sbjct: 161 AYTEMEHTCYHFEVKREFLQGALKR 185
>AT3G57470.2 | chr3:21269428-21275400 REVERSE LENGTH=892
Length = 891
Score = 84.0 bits (206), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/52 (73%), Positives = 42/52 (80%)
Query: 88 MLFYASEKYPIEDSYSKYIAEHGGSRNAFTSREHTNFFFDVNNDCLDDALDR 139
MLFYASEKYP EDSYSKYI EHGGS NA+TS E TN+ FD+N D +ALDR
Sbjct: 1 MLFYASEKYPEEDSYSKYITEHGGSTNAYTSSEDTNYHFDINTDSFYEALDR 52
>AT3G02090.2 | chr3:365624-368534 FORWARD LENGTH=536
Length = 535
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 40 RRVVLPNALECLVISDPDTDKAAASMNVSVGYFCDPEGLPGLAHFLEHMLFYASEKYPIE 99
R LPN L S+ A + + G + + G AHFLEHM+F +++ +
Sbjct: 98 RVTTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVR 157
Query: 100 DSYSKYIAEHGGSRNAFTSREHTNFFFDVNNDCLDDALD 138
+ + I + GG NA+TSRE T ++ V + ++ ALD
Sbjct: 158 -ALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALD 195
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,839,998
Number of extensions: 111128
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 4
Length of query: 139
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 51
Effective length of database: 8,693,961
Effective search space: 443392011
Effective search space used: 443392011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)