Os07g0565300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bromodomain containing protein.
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Os07g0565300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Bromodomain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.73 | 0.273 | 10.8 | 0.276 | 1.04 | -0.501 | -0.116 | 0.0772 | 0.321 | 22.7 | 20.26 | 209 | -- | -- |
| 33.74 | 0.271 | 10.8 | 0.274 | 1.04 | -0.503 | -0.152 | -- | 0.319 | 22.7 | 20.26 | 208 | -- | -- |
| 33.77 | 0.271 | 10.8 | 0.276 | 1.04 | -0.501 | -- | 0.146 | 0.324 | 22.7 | 20.27 | 208 | -- | -- |
| 33.84 | 0.271 | 10.8 | 0.278 | 1.04 | -0.495 | -- | -- | 0.32 | 22.7 | 20.27 | 208 | -- | -- |
| 51.85 | 0.335 | 10.7 | 0.257 | -- | -0.928 | -- | 0.0209 | 0.374 | -- | 1.559 | 48 | -- | -- |
| 39.47 | 0.295 | 10.8 | 0.212 | 1.27 | -- | -0.0424 | -- | 0.269 | 23.5 | -- | -- | -- | -- |
| 39.47 | 0.294 | 10.8 | 0.214 | 1.27 | -- | -- | -- | 0.269 | 23.5 | -- | -- | -- | -- |
| 51.48 | 0.334 | 10.7 | 0.258 | -- | -0.916 | -- | -- | 0.313 | -- | 1.44 | 48 | -- | -- |
| 35.78 | 0.279 | 10.8 | -- | 1.07 | -0.468 | -- | -- | 0.286 | 22.8 | 21.49 | 207 | -- | -- |
| 141.38 | 0.556 | 10.7 | 0.248 | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
| 40.68 | 0.298 | 10.8 | -- | 1.28 | -- | -- | -- | 0.245 | 23.5 | -- | -- | -- | -- |
| 52.97 | 0.339 | 10.7 | -- | -- | -0.925 | -- | -- | 0.293 | -- | 1.55 | 48 | -- | -- |
| 143 | 0.558 | 10.7 | -- | -- | -- | -- | -- | 0.255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.54 | humidity | 80 | 270 | < th | dose independent | rect. | 22 | 17 |
| 14 | 32.17 | humidity | 80 | 270 | < th | dose independent | rect. | 3 | 12 |
| 24 | 32.31 | humidity | 80 | 270 | < th | dose independent | rect. | 8 | 7 |
| 29 | 32.37 | humidity | 80 | 90 | < th | dose independent | rect. | 9 | 9 |
| 33 | 32.50 | humidity | 90 | 270 | < th | dose dependent | rect. | 22 | 17 |
| 45 | 32.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 53 | 32.76 | humidity | 60 | 90 | > th | dose dependent | rect. | 6 | 14 |
| 56 | 32.77 | humidity | 90 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 59 | 32.80 | radiation | 40 | 90 | < th | dose dependent | rect. | 6 | 14 |
| 64 | 32.83 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 15 |
| 84 | 32.99 | humidity | 90 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 92 | 33.07 | radiation | 20 | 270 | > th | dose independent | rect. | 9 | 6 |
| 96 | 33.10 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 17 |
| 103 | 33.13 | humidity | 80 | 270 | < th | dose independent | sin | 3 | NA |
| 111 | 33.18 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 15 |
| 125 | 33.23 | humidity | 80 | 270 | > th | dose independent | sin | 3 | NA |
| 128 | 33.23 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 132 | 33.27 | humidity | 80 | 90 | > th | dose independent | rect. | 6 | 14 |
| 143 | 33.32 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 146 | 33.34 | radiation | 20 | 270 | > th | dose independent | rect. | 6 | 9 |
| 178 | 33.40 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 193 | 33.41 | radiation | 40 | 90 | < th | dose dependent | sin | 20 | NA |
| 227 | 33.53 | humidity | 80 | 90 | < th | dose independent | sin | 0 | NA |
| 252 | 33.60 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 17 |
| 296 | 33.69 | humidity | 70 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 298 | 33.69 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 305 | 33.71 | humidity | 70 | 270 | > th | dose dependent | sin | 2 | NA |
| 347 | 33.78 | radiation | 40 | 270 | < th | dose dependent | sin | 1 | NA |
| 354 | 33.78 | radiation | 40 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 393 | 33.85 | humidity | 70 | 90 | > th | dose dependent | sin | 23 | NA |
| 395 | 33.85 | radiation | 1 | 270 | > th | dose dependent | sin | 2 | NA |
| 402 | 33.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 430 | 33.89 | radiation | 1 | 90 | > th | dose dependent | sin | 20 | NA |
| 453 | 33.92 | radiation | 20 | 90 | < th | dose independent | rect. | 6 | 14 |
| 461 | 33.92 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 463 | 33.93 | radiation | 20 | 270 | > th | dose independent | sin | 2 | NA |
| 524 | 33.98 | radiation | 40 | 90 | < th | dose independent | rect. | 6 | 15 |
| 582 | 34.03 | humidity | 90 | 270 | < th | dose dependent | sin | 5 | NA |
| 588 | 34.04 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 22 |
| 649 | 34.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 686 | 34.13 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 702 | 34.14 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 707 | 34.15 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 738 | 34.17 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 758 | 34.19 | radiation | 20 | 90 | > th | dose independent | sin | 21 | NA |
| 762 | 34.19 | temperature | 15 | 270 | > th | dose independent | rect. | 20 | 19 |
| 763 | 34.19 | radiation | 20 | 90 | > th | dose independent | rect. | 9 | 22 |
| 804 | 34.21 | radiation | 40 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 826 | 34.23 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 15 |
| 904 | 34.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 977 | 34.31 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 996 | 34.33 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 11 |