BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0565300 Os07g0565300|AK101955
(494 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61215.1 | chr1:22573173-22575374 FORWARD LENGTH=476 86 4e-17
AT2G42150.1 | chr2:17572463-17574564 FORWARD LENGTH=632 62 7e-10
AT2G44430.1 | chr2:18333603-18336165 FORWARD LENGTH=647 62 9e-10
AT3G57980.1 | chr3:21466919-21469148 REVERSE LENGTH=633 61 1e-09
AT3G60110.1 | chr3:22197993-22201159 FORWARD LENGTH=642 60 2e-09
>AT1G61215.1 | chr1:22573173-22575374 FORWARD LENGTH=476
Length = 475
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 12/211 (5%)
Query: 289 LAEILKTISTQSDCYMLQRRLDVQRKRTRYKKMIRRHIDFRILHSKIKSGATSSTKELLR 348
L +I TI+ + +RRLD Q KR RYKK++RRH+D + S+I + SS KEL R
Sbjct: 269 LMKIYNTIAQNECALVFRRRLDSQ-KRGRYKKLVRRHMDLDTVQSRINGCSISSAKELFR 327
Query: 349 DILLFVNNVLAFYPKATLEHMAAIELRNIAFRTVQE--SASMPSKSCGVTGAATAPLV-- 404
D LL NN FY K T E+ +A+ LR+I ++++ + P +T +T +V
Sbjct: 328 DFLLVANNAAIFYSKNTREYKSAVGLRDIVTKSLRHYLTEDHPPHRSSITAGSTKVVVLH 387
Query: 405 KKNTRPVQPGSHGPHDAKRSKVSLKGTGSTVKQGEAKGSRGGS--SVTANVKTMQRNPPA 462
+K+T P S + LK TV Q AK S G+ SVT + ++ A
Sbjct: 388 QKSTSPSVRTSLAAKKPRTGAHPLK----TVVQDMAKTSSRGNKRSVTDLPVSAVKSSAA 443
Query: 463 KKRGVGRPPKNGQKRAAAQQDSPNKGRKRTR 493
K+G K+G++ + GRKR R
Sbjct: 444 GKKGTA-VRKDGRQANRGLESPALMGRKRNR 473
>AT2G42150.1 | chr2:17572463-17574564 FORWARD LENGTH=632
Length = 631
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 40 WGTWEELVLGSAVIRHXXXXXXXXXXXXRSRSP--CAFSPEECEAKFSEIQARYS----- 92
W TWEEL+L AV RH + SP C+ + C K+ ++++R++
Sbjct: 16 WSTWEELLLACAVHRHGTESWNSVSAEIQKLSPNLCSLTASACRHKYFDLKSRFTQELPV 75
Query: 93 -------ACDAWFEELRKRRVAELRNDLKKSENFIGSLQSMIKSL 130
+ W EELRK RV ELR ++++ + I +LQS +K L
Sbjct: 76 PESVAEISTAPWLEELRKLRVDELRREVEQYDLSISTLQSKVKQL 120
>AT2G44430.1 | chr2:18333603-18336165 FORWARD LENGTH=647
Length = 646
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 15/184 (8%)
Query: 246 RAGENTSTSHIQTDGSSEGYAKKGLKTPNLESGVSVVEKAKPNLAEILKTISTQSDCYML 305
R E + + + G+SE K+ + + E L +L I + +
Sbjct: 269 RGSEASHSDELGESGTSESKWKRKRRKQGGAGEIRSAESKSQPLISLLDLIRSHPRGSLF 328
Query: 306 QRRLDVQRKRTRYKKMIRRHIDFRILHSKIKSGATSSTKELL-RDILLFVNNVLAFYPKA 364
+RRL Q + YK M+++H+D + K+K G+ S+ + RD+ L N + F+P +
Sbjct: 329 ERRLRSQEAKD-YKSMVKQHLDIETIQRKLKQGSYDSSSLIFYRDLQLLFTNAIVFFPLS 387
Query: 365 TLEHMAAIELRNIAFRTVQESASMPSKSCGVTGAATAPLVKKNTRPVQPGSHGPHDAKRS 424
+ E MAA ELR + + +++ TG A L+K+ ++ G DA+ S
Sbjct: 388 SSESMAAHELRAVVSQEMRKE----------TGKAGPRLIKQEASGMRSGK---ADAETS 434
Query: 425 KVSL 428
SL
Sbjct: 435 DSSL 438
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 25/116 (21%)
Query: 40 WGTWEELVLGSAVIRHXXXXXXXXXXXXRSRSPCAF---SPEECEAKFSEIQARYSACDA 96
WGTWEEL+L AV RH RSRS + S +C K+ +++ R+ +
Sbjct: 50 WGTWEELLLACAVKRHGFGDWDSVATEVRSRSSLSHLLASANDCRHKYRDLKRRFHEQEK 109
Query: 97 ----------------------WFEELRKRRVAELRNDLKKSENFIGSLQSMIKSL 130
W E+LR RVAELR ++++ + I SLQ +K L
Sbjct: 110 TDVTATVEEEEEEEERVGNNIPWLEQLRNLRVAELRREVERYDCSILSLQLKVKKL 165
>AT3G57980.1 | chr3:21466919-21469148 REVERSE LENGTH=633
Length = 632
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 65/115 (56%), Gaps = 9/115 (7%)
Query: 289 LAEILKTISTQSDCYMLQRRLDVQRKRTRYKKMIRRHIDFRILHSKIKSG--ATSSTKEL 346
L++ ++ + + RRL+ Q + + Y ++IR+HIDF ++ S+++ G T+ TK
Sbjct: 278 LSDFIEILQSHPIGSHFSRRLETQ-ETSDYYRIIRQHIDFEMIRSRVEEGYYKTARTK-F 335
Query: 347 LRDILLFVNNVLAFYPKATLEHMAAIEL-----RNIAFRTVQESASMPSKSCGVT 396
RD+LL +NNV FY + + E AA +L + ++F+ +++ P + VT
Sbjct: 336 FRDLLLLINNVRVFYGEPSPEFNAAKQLYQLIKKQMSFKIPKQTLPPPKEDALVT 390
>AT3G60110.1 | chr3:22197993-22201159 FORWARD LENGTH=642
Length = 641
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
Query: 40 WGTWEELVLGSAVIRHXXXX--XXXXXXXXRSRSPCAFSPEECEAKFSEIQARY-SACD- 95
WGTWEELVL AV RH RSRS S C K+ +++ R+ + D
Sbjct: 52 WGTWEELVLTCAVKRHAFSDWDSVAKEVQARSRSSLIVSAVNCRLKYQDLKRRFQDSVDV 111
Query: 96 ------------------AWFEELRKRRVAELRNDLKKSENFIGSLQSMIKSLSNSKH-D 136
+W E+LR +AELR ++++ ++ I SLQ +K L K D
Sbjct: 112 GDENTEAAANEEDEVGEISWLEQLRSLHMAELRREVQRCDDSILSLQLKVKKLEEEKDGD 171
Query: 137 DGNSECHTSHTES 149
DG+++ + E+
Sbjct: 172 DGDNKPDLKNDET 184
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 283 EKAKPNLAEILKTISTQSDCYMLQRRLDVQRKRTRYKKMIRRHIDFRILHSKIKSGA-TS 341
+K++P L +I+K I + + + RL Q + YK++IR+H+D + + K++ G+ S
Sbjct: 298 DKSQP-LIDIIKLIRSHPRGSVFESRLRSQDTKD-YKRLIRQHLDMKTIEKKMEKGSYVS 355
Query: 342 STKELLRDILLFVNNVLAFYPKATLEHMAAIELRNIA 378
S+ RD+ L N + F+P ++ E +AA ELR +
Sbjct: 356 SSLSFYRDLKLLFTNAIVFFPTSSSESIAAQELRTLV 392
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.125 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,037,247
Number of extensions: 353794
Number of successful extensions: 1067
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1061
Number of HSP's successfully gapped: 7
Length of query: 494
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 391
Effective length of database: 8,282,721
Effective search space: 3238543911
Effective search space used: 3238543911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)