Os07g0564200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0564200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 294.8 | 0.807 | 8.64 | -16 | 1.06 | 15.3 | 0.481 | -163 | 0.177 | 17.2 | 30.03 | 765 | 18 | 2.7 |
| 470.18 | 1.02 | 6.88 | -0.263 | 1.69 | -0.549 | 1.87 | -- | 0.416 | 16.9 | 30.03 | 765 | 18 | 2.7 |
| 295.27 | 0.8 | 8.66 | -16.2 | 1.07 | 15.4 | -- | -164 | 0.178 | 17.2 | 30.05 | 766 | 18 | 14.2 |
| 299.74 | 0.806 | 6.88 | 0.255 | 0.945 | -2.62 | -- | -- | 0.291 | 18.1 | 26.3 | 679 | 18.4 | 5.17 |
| 351.4 | 0.873 | 8.65 | -16.3 | -- | 15.3 | -- | -166 | 0.123 | -- | 30 | 744 | 18 | 14.1 |
| 471.01 | 1.02 | 6.88 | -0.27 | 1.67 | -- | 1.83 | -- | 0.422 | 16.9 | -- | -- | -- | -- |
| 479.6 | 1.03 | 6.87 | -0.265 | 1.68 | -- | -- | -- | 0.431 | 16.9 | -- | -- | -- | -- |
| 324.61 | 0.839 | 6.81 | 0.319 | -- | -3.17 | -- | -- | 0.375 | -- | 25.89 | 610 | 19.9 | 3.22 |
| 293.37 | 0.798 | 6.91 | -- | 0.925 | -2.58 | -- | -- | 0.226 | 18.1 | 26.2 | 626 | 19.9 | 2.43 |
| 628.23 | 1.17 | 6.86 | -0.327 | -- | -- | -- | -- | 0.387 | -- | -- | -- | -- | -- |
| 481.45 | 1.03 | 6.87 | -- | 1.68 | -- | -- | -- | 0.46 | 16.9 | -- | -- | -- | -- |
| 320.93 | 0.834 | 6.9 | -- | -- | -3.11 | -- | -- | 0.212 | -- | 26 | 598 | 20 | 2.9 |
| 631.04 | 1.17 | 6.85 | -- | -- | -- | -- | -- | 0.424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 295.04 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 16 | 302.52 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 28 | 305.92 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 39 | 305.98 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 41 | 306.40 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 82 | 308.78 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 197 | 333.50 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 201 | 334.61 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 14 |
| 202 | 334.69 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 206 | 336.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 208 | 336.61 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 210 | 336.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 226 | 337.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 259 | 339.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 262 | 339.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 263 | 339.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 323 | 344.85 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 325 | 344.96 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 371 | 348.56 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 495 | 353.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 501 | 354.45 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 529 | 355.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 546 | 356.39 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 2 |
| 557 | 357.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 563 | 357.45 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 565 | 357.52 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 566 | 357.55 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 581 | 357.72 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 640 | 359.41 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 659 | 359.90 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 674 | 359.92 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 692 | 360.21 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 739 | 360.88 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 745 | 361.22 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 747 | 361.32 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 762 | 361.36 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 780 | 361.83 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 782 | 361.93 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 6 |
| 806 | 362.20 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 814 | 362.44 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 827 | 362.53 | radiation | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 830 | 362.58 | wind | 5 | 43200 | > th | dose dependent | rect. | 21 | 18 |
| 866 | 363.37 | wind | 5 | 43200 | > th | dose independent | sin | 4 | NA |
| 874 | 363.57 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 886 | 363.74 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 911 | 364.02 | wind | 5 | 43200 | > th | dose dependent | sin | 5 | NA |
| 932 | 364.26 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 21 |