BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0564200 Os07g0564200|AK072771
         (76 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52855.1  | chr1:19683137-19683343 REVERSE LENGTH=69           100   3e-22
AT3G15534.1  | chr3:5258876-5259082 FORWARD LENGTH=69              97   2e-21
AT2G20835.1  | chr2:8971059-8971265 REVERSE LENGTH=69              94   2e-20

>AT1G52855.1 | chr1:19683137-19683343 REVERSE LENGTH=69
          Length = 68

 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 60/69 (86%), Gaps = 1/69 (1%)

Query: 1  MVFFCFLVDQRRKVRSSKPAAGICSRCGGCASVADMETATRFCYLLTVHRATWRAIICTF 60
          MV FCFLVDQ RKV+ SKPAAG CSRCG CAS+ADM+T+TRFC+ + ++  +WRA++C+F
Sbjct: 1  MVCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCF-IPIYWRSWRAVVCSF 59

Query: 61 CGAMLKSYR 69
          CG++LKSYR
Sbjct: 60 CGSVLKSYR 68



>AT3G15534.1 | chr3:5258876-5259082 FORWARD LENGTH=69
          Length = 68

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 59/69 (85%), Gaps = 1/69 (1%)

Query: 1  MVFFCFLVDQRRKVRSSKPAAGICSRCGGCASVADMETATRFCYLLTVHRATWRAIICTF 60
          MV FCFLVDQ+RKV+ SKPAAG CSRCG  A VADM+T+TRFC L+ ++  +WRAI+C+F
Sbjct: 1  MVCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFC-LIPIYCRSWRAIVCSF 59

Query: 61 CGAMLKSYR 69
          CG++LKSYR
Sbjct: 60 CGSVLKSYR 68



>AT2G20835.1 | chr2:8971059-8971265 REVERSE LENGTH=69
          Length = 68

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 1  MVFFCFLVDQRRKVRSSKPAAGICSRCGGCASVADMETATRFCYLLTVHRATWRAIICTF 60
          M  FCFLVDQR+KVR  KPAAG+CSRCGG A VADM T+TRFC  +  +R  W+AI+C  
Sbjct: 1  MAIFCFLVDQRKKVRGRKPAAGLCSRCGGGAVVADMRTSTRFCG-VPFYRKAWKAIVCHI 59

Query: 61 CGAMLKSY 68
          CGA+LKSY
Sbjct: 60 CGAVLKSY 67



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.336    0.138    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,617,204
Number of extensions: 47365
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 3
Length of query: 76
Length of database: 11,106,569
Length adjustment: 48
Effective length of query: 28
Effective length of database: 9,790,601
Effective search space: 274136828
Effective search space used: 274136828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 104 (44.7 bits)