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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0563400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF761, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.65 (0.0541) R2 : 0.587
β1 : -2.92 (0.198) R2dD : 0.202 R2D : 0.157
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.66 (0.191) R2dE : 0.34 R2E : 0.326
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.09 (0.116) R2dN8 : 0.109 R2N8 : 0.0161
σ : 1.01
deviance : 471.73
__
_____
C
peak time of C : --
E
wheather : wind
threshold : -2.266
memory length : 166
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.7
open length of G : 15.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
471.7 1.02 6.63 -2.82 0.976 3.25 1.45 -0.397 -1.06 2.87 0.05239 114 16.8 16.4
470.37 1.01 6.61 -2.85 0.838 3.35 1.51 -- -1.02 2.98 -0.3242 115 16.7 16.4
469.07 1.01 6.6 -2.88 0.363 3.44 -- 1 -1.03 4.45 -1.777 114 16.8 16
470.7 1.01 6.64 -2.9 0.363 3.49 -- -- -1.09 4.64 -1.704 114 16.8 16
469.59 1.01 6.66 -2.88 -- 3.46 -- 1.22 -1.09 -- -2.708 117 16.9 15.9
606.52 1.15 6.66 -3.14 2.01 -- 0.497 -- -1.03 0.792 -- -- -- --
607.56 1.15 6.66 -3.15 2.01 -- -- -- -1.03 0.779 -- -- -- --
471.73 1.01 6.65 -2.92 -- 3.66 -- -- -1.09 -- -2.266 166 16.7 15.8
688.51 1.22 6.6 -- 0.484 3.86 -- -- -0.806 5.77 -0.9273 113 16.8 16
858.89 1.37 6.62 -3.08 -- -- -- -- -0.993 -- -- -- -- --
869.65 1.38 6.58 -- 1.96 -- -- -- -0.678 0.706 -- -- -- --
685.34 1.22 6.61 -- -- 4.26 -- -- -0.856 -- -0.9223 191 16.5 16
1109.22 1.55 6.55 -- -- -- -- -- -0.651 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 484.11 wind 1.0 90 > th dose dependent rect. 17 16
2 488.88 wind 1.0 270 > th dose dependent rect. 15 17
4 492.66 wind 1.0 270 > th dose independent rect. 15 17
6 493.23 humidity 60.0 270 > th dose dependent rect. 20 7
7 493.29 wind 1.0 270 > th dose independent rect. 16 15
14 497.40 wind 9.0 270 < th dose dependent rect. 20 7
18 499.46 atmosphere 1015.0 270 < th dose dependent rect. 15 6
22 500.53 wind 5.0 270 < th dose independent rect. 20 7
28 502.12 humidity 80.0 270 > th dose independent rect. 20 7
34 502.94 wind 9.0 270 < th dose dependent rect. 20 19
36 503.23 atmosphere 1015.0 90 < th dose dependent rect. 17 6
43 505.36 temperature 10.0 270 > th dose dependent rect. 20 19
44 505.50 wind 9.0 270 < th dose dependent rect. 10 17
46 505.73 wind 1.0 270 > th dose dependent rect. 17 1
49 505.97 wind 1.0 270 > th dose dependent rect. 16 4
53 506.14 wind 1.0 270 > th dose independent rect. 3 17
60 506.98 temperature 10.0 90 > th dose dependent rect. 9 8
61 507.07 wind 5.0 270 > th dose independent rect. 17 1
62 507.16 wind 1.0 90 > th dose dependent rect. 17 6
72 508.41 wind 5.0 270 < th dose independent rect. 11 16
81 509.40 wind 9.0 270 < th dose independent rect. 8 8
87 509.83 wind 1.0 90 > th dose independent rect. 9 8
92 509.92 humidity 90.0 30 < th dose independent rect. 18 15
95 510.37 atmosphere 995.0 270 > th dose independent rect. 8 8
98 510.47 precipitation 0.1 90 < th dose independent rect. 9 8
99 510.47 precipitation 0.1 90 < th dose dependent rect. 9 8
100 510.53 wind 1.0 270 > th dose dependent rect. 15 6
101 510.58 humidity 50.0 90 > th dose independent rect. 17 16
103 510.76 temperature 10.0 90 > th dose independent rect. 9 8
104 510.76 atmosphere 1015.0 90 < th dose independent rect. 9 8
105 510.76 temperature 10.0 90 > th dose independent rect. 17 16
110 510.94 temperature 10.0 90 > th dose dependent rect. 23 18
114 511.24 wind 7.0 270 < th dose independent rect. 21 18
116 511.34 atmosphere 995.0 90 > th dose independent rect. 17 16
133 512.29 temperature 15.0 270 > th dose independent rect. 4 16
136 512.65 radiation 40.0 270 < th dose independent rect. 16 16
150 513.54 wind 9.0 90 < th dose independent rect. 17 16
153 513.94 humidity 50.0 270 > th dose independent rect. 8 8
162 514.58 atmosphere 995.0 270 > th dose independent rect. 21 18
168 514.90 temperature 10.0 270 > th dose independent rect. 20 8
169 514.90 temperature 30.0 270 < th dose independent rect. 20 8
170 514.90 humidity 50.0 270 > th dose independent rect. 20 8
173 514.90 atmosphere 995.0 270 > th dose independent rect. 20 8
174 514.90 radiation 1.0 270 < th dose independent rect. 20 8
180 514.90 atmosphere 1015.0 270 < th dose independent rect. 4 16
181 514.90 radiation 10.0 270 < th dose dependent rect. 20 8
191 515.35 wind 1.0 270 > th dose independent rect. 15 6
195 515.49 temperature 10.0 270 > th dose independent rect. 15 6
196 515.49 temperature 10.0 270 > th dose independent rect. 21 18
199 515.57 temperature 25.0 30 > th dose independent rect. 11 7
202 515.89 radiation 40.0 270 < th dose independent rect. 15 6
214 516.09 atmosphere 1015.0 270 < th dose independent rect. 15 6
246 516.54 humidity 50.0 270 > th dose independent rect. 21 18
250 516.62 precipitation 0.1 270 < th dose independent rect. 16 16
252 516.62 precipitation 0.1 270 < th dose dependent rect. 16 16
271 517.29 precipitation 0.1 270 < th dose independent rect. 20 8
272 517.29 precipitation 0.1 270 < th dose dependent rect. 20 8
283 517.63 precipitation 0.1 270 < th dose independent rect. 21 18
284 517.63 precipitation 0.1 270 < th dose dependent rect. 21 18
303 518.14 temperature 20.0 270 > th dose independent rect. 20 20
308 518.30 temperature 25.0 90 > th dose independent rect. 9 8
318 518.82 radiation 30.0 90 < th dose dependent rect. 16 7
320 518.89 atmosphere 995.0 90 > th dose independent rect. 23 18
346 519.62 precipitation 0.1 270 < th dose independent rect. 4 16
347 519.62 precipitation 0.1 270 < th dose dependent rect. 4 16
361 519.87 precipitation 0.1 270 < th dose independent rect. 15 6
362 519.87 precipitation 0.1 270 < th dose dependent rect. 15 6
375 520.17 wind 9.0 270 < th dose independent rect. 15 6
378 520.36 temperature 10.0 270 > th dose independent rect. 14 8
379 520.36 temperature 10.0 270 > th dose independent rect. 22 16
380 520.36 atmosphere 995.0 270 > th dose independent rect. 22 16
394 520.68 precipitation 0.1 90 < th dose independent rect. 23 18
396 520.68 precipitation 0.1 90 < th dose dependent rect. 23 18
399 520.73 humidity 90.0 30 < th dose dependent rect. 18 15
403 520.80 wind 1.0 270 > th dose independent rect. 14 8
421 521.06 radiation 40.0 270 < th dose dependent rect. 16 3
439 521.28 temperature 30.0 270 < th dose dependent rect. 3 6
458 521.52 temperature 10.0 90 > th dose independent rect. 17 6
459 521.52 radiation 20.0 90 < th dose independent rect. 17 6
462 521.52 temperature 10.0 90 > th dose independent rect. 23 18
465 521.60 precipitation 0.1 270 < th dose independent rect. 22 16
466 521.60 precipitation 0.1 270 < th dose dependent rect. 22 16
488 522.17 humidity 50.0 270 > th dose independent rect. 22 16
489 522.17 temperature 10.0 10 > th dose dependent rect. 9 9
490 522.19 wind 1.0 90 > th dose independent rect. 17 6
493 522.22 wind 9.0 270 < th dose independent rect. 3 17
503 522.37 atmosphere 1015.0 90 < th dose independent rect. 17 6
534 522.56 radiation 40.0 270 < th dose dependent rect. 15 5
535 522.57 humidity 90.0 30 < th dose independent rect. 18 17
542 522.74 atmosphere 995.0 90 > th dose independent rect. 17 6
544 522.75 radiation 40.0 270 < th dose dependent rect. 16 16
549 522.86 humidity 90.0 270 < th dose independent rect. 15 5
556 522.97 atmosphere 995.0 270 > th dose dependent rect. 3 6
576 523.39 temperature 15.0 10 > th dose dependent rect. 23 19
578 523.42 wind 1.0 270 > th dose independent rect. 2 7
607 523.93 radiation 1.0 270 > th dose independent rect. 9 6
631 524.27 wind 9.0 90 < th dose independent rect. 17 6
649 524.55 humidity 50.0 90 > th dose independent rect. 17 6
666 524.80 atmosphere 1015.0 90 < th dose independent rect. 17 16
682 525.06 radiation 1.0 270 > th dose independent rect. 8 8
689 525.17 atmosphere 995.0 270 > th dose independent rect. 16 4
692 525.21 temperature 10.0 270 > th dose dependent rect. 20 7
697 525.41 atmosphere 995.0 270 > th dose independent rect. 15 6
702 525.49 precipitation 0.1 270 < th dose independent rect. 14 8
703 525.49 precipitation 0.1 270 < th dose dependent rect. 14 8
708 525.63 atmosphere 995.0 90 > th dose independent rect. 11 6
728 525.94 humidity 60.0 30 > th dose dependent rect. 20 10
738 526.09 wind 1.0 90 > th dose independent rect. 11 6
753 526.34 wind 9.0 90 < th dose independent rect. 11 6
756 526.38 precipitation 0.1 90 < th dose independent rect. 11 6
758 526.38 precipitation 0.1 90 < th dose dependent rect. 11 6
821 527.27 temperature 10.0 90 > th dose independent rect. 11 6
822 527.27 atmosphere 1015.0 90 < th dose independent rect. 11 6
829 527.35 atmosphere 995.0 270 > th dose independent rect. 3 17
830 527.37 temperature 10.0 10 > th dose dependent rect. 11 7
860 527.73 wind 9.0 30 < th dose dependent rect. 20 10
876 527.91 atmosphere 995.0 90 > th dose independent rect. 17 18
902 528.12 atmosphere 1015.0 270 < th dose independent rect. 21 18
905 528.14 wind 9.0 270 < th dose dependent rect. 9 6
918 528.25 radiation 10.0 10 < th dose dependent rect. 17 6
983 528.83 atmosphere 1015.0 90 < th dose independent rect. 23 18