BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0563400 Os07g0563400|AK106307
(333 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61260.1 | chr1:22593756-22594986 REVERSE LENGTH=345 128 5e-30
AT5G54300.1 | chr5:22054270-22055342 REVERSE LENGTH=327 128 5e-30
AT1G11220.1 | chr1:3760022-3761165 REVERSE LENGTH=311 79 4e-15
AT1G11210.1 | chr1:3755876-3756911 REVERSE LENGTH=309 68 5e-12
AT4G04990.1 | chr4:2555090-2557046 FORWARD LENGTH=304 52 7e-07
>AT1G61260.1 | chr1:22593756-22594986 REVERSE LENGTH=345
Length = 344
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 100/152 (65%), Gaps = 13/152 (8%)
Query: 183 EKPLVSTRFG-RKPVKASPEGSSRALGVSRPRKEQTLESTWKAITEGRAPPLARHL-KKS 240
EKPLV++RFG RK +KAS EG RAL V++P+K +TLE+TWK ITEG++ PL R L ++S
Sbjct: 201 EKPLVTSRFGHRKLMKASQEGG-RALRVTKPKKNETLENTWKMITEGKSTPLTRQLYRRS 259
Query: 241 DTWETRPXXXXXXXXXXEDAPPPATAMRKAETFNEAAXXXXXXK--KVRREPSLGQDELN 298
DT+ E P +K++TF + + KVR+EPSL Q+ELN
Sbjct: 260 DTF----GRGDSGGVDGEVKP----VYKKSDTFRDRTNYYQLAETAKVRKEPSLSQEELN 311
Query: 299 RRVEAFINKFNMEMRLQRQESLKHYNEMISRG 330
RRVEAFI KFN EM+LQR ESL+ Y E+ SRG
Sbjct: 312 RRVEAFIKKFNEEMKLQRMESLRQYKEITSRG 343
>AT5G54300.1 | chr5:22054270-22055342 REVERSE LENGTH=327
Length = 326
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 94/146 (64%), Gaps = 12/146 (8%)
Query: 190 RFGR-KPVKASPEGSSR--ALGVSRP-RKEQTLESTWKAITEGRAPPLARHLKKSDTWET 245
RF + K +K++ EG ++ ALGV++P R++ TLE+TWK ITEGR+ PL +HL KSDTW+
Sbjct: 187 RFNQQKSLKSNSEGGNKKTALGVTKPPRRQDTLETTWKKITEGRSTPLTKHLTKSDTWQE 246
Query: 246 RPXXXXXXXXXXEDAPPPATAMRKAETFNEAAXXXXXXKKVRREPSLGQDELNRRVEAFI 305
R + +P M K+E + ++REPS GQ+ELNRRVEAFI
Sbjct: 247 R--------AHVQSSPENKEKMTKSENLKDINTPTEEKTVLKREPSPGQEELNRRVEAFI 298
Query: 306 NKFNMEMRLQRQESLKHYNEMISRGS 331
KFN EMRLQR ESL YNEM++ G+
Sbjct: 299 KKFNEEMRLQRLESLAKYNEMVNGGT 324
>AT1G11220.1 | chr1:3760022-3761165 REVERSE LENGTH=311
Length = 310
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 79/150 (52%), Gaps = 27/150 (18%)
Query: 183 EKPLVSTRFG-RKPVKASPEGSSR---ALGVSRPRKEQTLESTWKAITE-GRAPPLARHL 237
EKPLVS R G RKP+KAS +G +R AL V +P + +TLE+TW ITE G++ PL H
Sbjct: 174 EKPLVSARSGHRKPIKASSKGVNRKKKALKVVKPNRHETLENTWNMITEEGKSTPLTCHY 233
Query: 238 KKSDTWETRPXXXXXXXXXXEDAPPPATAMRKAETFNEAAXXXXXX------KKVRREPS 291
+K+ D P +RKAETF + K+++E S
Sbjct: 234 RKTSM---------SGLNAGGDVKP---VLRKAETFRDVTNYRQSSPTVTSPVKMKKEMS 281
Query: 292 LGQDELNRRVEAFINKFNMEMRLQRQESLK 321
++ELNRRVEAFI K E R ESLK
Sbjct: 282 PSREELNRRVEAFIKKCKEE----RLESLK 307
>AT1G11210.1 | chr1:3755876-3756911 REVERSE LENGTH=309
Length = 308
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 30/165 (18%)
Query: 183 EKPLVSTRFGRKP--VKASP--EGSSRALGVSRPRKEQTLESTWKAITEGRAP--PLARH 236
EKPLV+ R G+K VK +P S RAL V++P++ +TLE+TWK I EG PL +
Sbjct: 160 EKPLVTARIGQKKPVVKTTPAERNSMRALRVAKPKRNETLENTWKMIMEGNKSTLPLTSY 219
Query: 237 LKKSDTWETRPXXXXXXXXXXEDAPPPATAMRKAETFNE--------AAXXXXXXKKVRR 288
K+ DT+ + + ++K+ETF++ K +
Sbjct: 220 YKRPDTF------------GLGEETKQSGVLKKSETFSDRTNCYQSLPPPPPPLVKVKKV 267
Query: 289 EPSLGQDELNRRVEAFINKFNMEMRLQRQESLKHYNEMISRGSVY 333
+ S +DELNR+VEAFI K N E R S+K NE+ G Y
Sbjct: 268 KVSRSRDELNRKVEAFIKKCNDE----RFASMKLDNEVARHGLSY 308
>AT4G04990.1 | chr4:2555090-2557046 FORWARD LENGTH=304
Length = 303
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 285 KVRREPSLGQDELNRRVEAFINKFNMEMRLQRQESLKHY 323
K+++E S+G++ELN RVEAFI KF EM+LQR ES++ Y
Sbjct: 255 KLKKELSMGREELNSRVEAFITKFKDEMKLQRLESVRRY 293
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.126 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,751,534
Number of extensions: 152288
Number of successful extensions: 329
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,392,385
Effective search space: 1963818090
Effective search space used: 1963818090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)