Os07g0562400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Major facilitator superfamily protein.
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Os07g0562400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Major facilitator superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.54 | 0.545 | 10.2 | -4.34 | 0.605 | 1.88 | 0.23 | -12 | 0.0577 | 13.4 | 26.21 | 4445 | -- | -- |
| 158.2 | 0.59 | 9.9 | -1.7 | 0.173 | 1.49 | -0.401 | -- | 0.347 | 9.9 | 15.72 | 15617 | -- | -- |
| 134.67 | 0.54 | 10.2 | -4.4 | 0.603 | 1.94 | -- | -12.5 | 0.0696 | 13.3 | 26.4 | 4434 | -- | -- |
| 149.78 | 0.57 | 9.93 | -2.09 | 0.633 | 1.33 | -- | -- | 0.213 | 13.6 | 7.624 | 7292 | -- | -- |
| 155.85 | 0.581 | 10.2 | -4.51 | -- | 1.88 | -- | -12.6 | 0.042 | -- | 26.53 | 4631 | -- | -- |
| 179.51 | 0.628 | 9.85 | -1.42 | 0.595 | -- | 0.206 | -- | 0.568 | 13.6 | -- | -- | -- | -- |
| 179.67 | 0.628 | 9.85 | -1.41 | 0.594 | -- | -- | -- | 0.569 | 13.5 | -- | -- | -- | -- |
| 160.98 | 0.594 | 9.91 | -1.74 | -- | 1.67 | -- | -- | 0.334 | -- | 7.624 | 7292 | -- | -- |
| 224.42 | 0.698 | 9.84 | -- | 0.635 | 0.478 | -- | -- | 0.614 | 13.6 | 20.68 | 1457 | -- | -- |
| 201.29 | 0.663 | 9.86 | -1.44 | -- | -- | -- | -- | 0.557 | -- | -- | -- | -- | -- |
| 232.26 | 0.713 | 9.81 | -- | 0.619 | -- | -- | -- | 0.727 | 13.6 | -- | -- | -- | -- |
| 232.58 | 0.713 | 9.85 | -- | -- | 0.965 | -- | -- | 0.582 | -- | 20.68 | 1457 | -- | -- |
| 255.71 | 0.746 | 9.82 | -- | -- | -- | -- | -- | 0.716 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.70 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 2 | 127.02 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 4 | 127.57 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 7 | 128.11 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 8 | 128.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 9 | 128.31 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 10 | 128.33 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 26 | 128.94 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 30 | 129.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 37 | 129.18 | radiation | 20 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 40 | 129.21 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 53 | 129.45 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 66 | 129.50 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 67 | 129.51 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 68 | 129.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 8 |
| 71 | 129.56 | radiation | 20 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 80 | 129.62 | radiation | 20 | 43200 | < th | dose independent | sin | 8 | NA |
| 131 | 129.92 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 137 | 129.95 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 144 | 130.00 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 182 | 130.09 | radiation | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 209 | 130.17 | radiation | 20 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 303 | 130.37 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 522 | 130.82 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 538 | 130.87 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 641 | 131.01 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 669 | 131.07 | radiation | 10 | 43200 | > th | dose dependent | sin | 9 | NA |
| 672 | 131.08 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 679 | 131.09 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 689 | 131.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 780 | 131.23 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 781 | 131.24 | radiation | 20 | 43200 | < th | dose independent | no | NA | NA |
| 923 | 131.39 | radiation | 40 | 43200 | < th | dose dependent | sin | 8 | NA |
| 950 | 131.47 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 957 | 131.49 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 1 |