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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0561300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.09 (0.0474) R2 : 0.589
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.06 (0.123) R2dC : 0.609 R2C : 0.442
β3 : -1.18 (0.103) R2dE : 0.131 R2E : -0.036
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.431 (0.1) R2dN8 : 0.0217 R2N8 : 0.00603
σ : 0.891
deviance : 365.71
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_____
C
peak time of C : 14.9
E
wheather : radiation
threshold : 10.01
memory length : 10
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12
open length of G : 11

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
360.67 0.892 4.09 -0.11 3.04 -1.14 -1.04 0.728 0.437 14.8 10.2 10 12 11.1
362.96 0.887 4.09 -0.136 3.03 -1.14 -0.837 -- 0.432 14.8 10.19 10 12.1 11.2
363.94 0.889 4.09 -0.132 3.03 -1.16 -- 0.553 0.414 14.8 10.03 10 12 11
365.07 0.89 4.1 -0.153 3.04 -1.18 -- -- 0.418 14.9 10 10 12 11
445.83 0.983 4.17 0.379 -- -2.75 -- 0.639 0.135 -- 7 729 15.4 7.45
408.27 0.947 4.08 -0.0862 2.76 -- -1.09 -- 0.331 13.4 -- -- -- --
413.09 0.952 4.09 -0.123 2.76 -- -- -- 0.326 13.4 -- -- -- --
381.58 0.91 4.08 -0.0916 -- -2.73 -- -- 0.42 -- 80.16 927 14.5 6.52
365.71 0.891 4.09 -- 3.06 -1.18 -- -- 0.431 14.9 10.01 10 12 11
880.78 1.39 4.12 -0.232 -- -- -- -- 0.267 -- -- -- -- --
413.49 0.951 4.08 -- 2.76 -- -- -- 0.339 13.4 -- -- -- --
381.66 0.91 4.09 -- -- -2.71 -- -- 0.412 -- 100.5 929 14.5 6.55
882.2 1.39 4.12 -- -- -- -- -- 0.293 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 363.13 radiation 10.0 10 < th dose independent rect. 12 11
3 363.73 temperature 20.0 270 > th dose independent rect. 13 7
7 365.67 radiation 10.0 10 < th dose independent rect. 10 13
11 366.48 radiation 30.0 10 < th dose dependent rect. 13 10
13 367.17 temperature 20.0 10 > th dose independent rect. 16 7
14 367.20 temperature 20.0 270 > th dose independent rect. 15 4
31 368.92 radiation 10.0 10 < th dose independent sin 20 NA
32 368.94 temperature 15.0 270 > th dose dependent rect. 15 5
39 369.77 humidity 90.0 270 < th dose independent rect. 15 4
46 369.99 radiation 10.0 10 < th dose independent rect. 5 18
49 370.11 humidity 50.0 270 > th dose dependent rect. 1 9
53 370.18 temperature 15.0 10 > th dose dependent rect. 16 7
56 370.26 radiation 20.0 10 < th dose dependent rect. 5 18
58 370.36 radiation 40.0 270 < th dose independent rect. 1 8
59 370.37 temperature 20.0 10 > th dose independent rect. 16 5
80 371.04 temperature 15.0 270 > th dose independent rect. 1 9
81 371.05 humidity 90.0 270 < th dose independent rect. 13 7
82 371.05 atmosphere 1015.0 270 < th dose dependent rect. 1 8
87 371.24 humidity 60.0 270 > th dose independent rect. 1 8
93 371.37 wind 9.0 270 < th dose independent rect. 1 8
97 371.38 atmosphere 995.0 270 > th dose independent rect. 1 8
98 371.38 atmosphere 1015.0 270 < th dose independent rect. 1 8
99 371.38 temperature 10.0 270 > th dose independent rect. 9 16
114 371.63 wind 9.0 270 < th dose independent rect. 9 16
115 371.65 atmosphere 995.0 90 > th dose dependent rect. 23 16
120 371.84 wind 9.0 270 < th dose dependent rect. 1 8
124 371.96 precipitation 0.1 270 < th dose independent rect. 1 8
125 371.96 precipitation 0.1 270 < th dose dependent rect. 1 8
126 372.00 atmosphere 995.0 270 > th dose dependent rect. 21 16
129 372.12 temperature 30.0 270 < th dose independent rect. 1 8
132 372.19 precipitation 0.1 270 < th dose independent rect. 15 15
134 372.19 precipitation 0.1 270 < th dose dependent rect. 15 15
138 372.24 radiation 20.0 10 < th dose dependent rect. 10 13
153 372.58 wind 9.0 270 < th dose independent rect. 15 15
165 372.80 atmosphere 1000.0 270 > th dose independent rect. 20 17
167 372.82 wind 9.0 270 < th dose independent rect. 6 9
169 372.86 atmosphere 1000.0 10 > th dose independent rect. 23 16
176 373.04 atmosphere 1000.0 90 > th dose independent rect. 22 17
181 373.10 wind 5.0 90 < th dose independent rect. 3 19
192 373.29 radiation 20.0 10 < th dose dependent sin 20 NA
195 373.31 temperature 10.0 270 > th dose independent rect. 6 9
196 373.31 atmosphere 1015.0 270 < th dose independent rect. 6 9
197 373.31 temperature 10.0 270 > th dose independent rect. 15 15
199 373.38 precipitation 0.1 270 < th dose independent rect. 6 9
200 373.38 precipitation 0.1 270 < th dose dependent rect. 6 9
202 373.40 radiation 30.0 270 < th dose independent rect. 15 15
205 373.42 radiation 40.0 270 < th dose dependent rect. 1 8
206 373.45 temperature 20.0 270 > th dose independent rect. 16 1
215 373.61 precipitation 0.1 270 < th dose independent rect. 2 18
216 373.61 precipitation 0.1 270 < th dose dependent rect. 2 18
229 373.84 precipitation 0.1 270 < th dose independent rect. 13 8
230 373.84 precipitation 0.1 270 < th dose dependent rect. 13 8
250 374.10 atmosphere 995.0 10 > th dose dependent rect. 23 16
252 374.12 humidity 50.0 10 > th dose independent rect. 16 7
261 374.16 radiation 20.0 10 < th dose dependent rect. 8 15
265 374.22 radiation 10.0 10 > th dose independent sin 19 NA
268 374.24 radiation 30.0 90 < th dose dependent rect. 13 20
278 374.34 wind 5.0 90 < th dose independent rect. 1 22
280 374.36 wind 1.0 270 > th dose independent rect. 6 9
282 374.38 temperature 20.0 270 > th dose dependent rect. 16 1
295 374.52 atmosphere 995.0 270 > th dose independent rect. 15 15
312 374.62 wind 1.0 270 > th dose independent rect. 13 8
315 374.66 atmosphere 1000.0 270 > th dose independent rect. 13 7
316 374.66 radiation 20.0 270 < th dose dependent rect. 1 19
359 375.10 atmosphere 995.0 270 > th dose independent rect. 2 18
361 375.12 precipitation 0.1 270 < th dose independent rect. 9 16
363 375.12 precipitation 0.1 270 < th dose dependent rect. 9 16
365 375.14 humidity 50.0 270 > th dose independent rect. 6 9
374 375.23 precipitation 0.1 270 < th dose independent rect. 21 16
377 375.23 precipitation 0.1 270 < th dose dependent rect. 21 16
382 375.25 wind 9.0 270 < th dose independent rect. 21 16
390 375.37 temperature 30.0 10 < th dose independent rect. 15 8
400 375.45 atmosphere 995.0 270 > th dose independent rect. 6 9
409 375.49 humidity 70.0 270 > th dose independent rect. 19 7
418 375.57 wind 9.0 270 < th dose independent rect. 13 8
422 375.62 radiation 10.0 270 < th dose independent rect. 1 19
425 375.64 temperature 10.0 270 > th dose independent rect. 13 8
426 375.64 temperature 10.0 270 > th dose independent rect. 21 16
455 375.79 temperature 15.0 270 > th dose independent rect. 2 18
464 375.86 precipitation 0.1 90 < th dose independent rect. 4 17
465 375.86 precipitation 0.1 90 < th dose dependent rect. 4 17
484 375.97 precipitation 0.1 270 < th dose independent rect. 20 6
485 375.97 precipitation 0.1 270 < th dose dependent rect. 20 6
493 376.01 radiation 1.0 270 > th dose independent rect. 6 10
515 376.19 atmosphere 1015.0 270 < th dose independent rect. 13 8
538 376.30 temperature 10.0 270 > th dose independent rect. 20 6
539 376.30 temperature 30.0 270 < th dose independent rect. 20 6
540 376.30 humidity 50.0 270 > th dose independent rect. 20 6
543 376.30 atmosphere 995.0 270 > th dose independent rect. 20 6
544 376.30 radiation 1.0 270 < th dose independent rect. 20 6
550 376.30 atmosphere 1015.0 270 < th dose independent rect. 2 18
551 376.30 radiation 1.0 270 < th dose dependent rect. 20 6
561 376.34 atmosphere 995.0 90 > th dose independent rect. 15 8
584 376.48 wind 9.0 270 < th dose independent rect. 20 6
624 376.68 precipitation 0.1 90 < th dose independent rect. 15 8
625 376.68 precipitation 0.1 90 < th dose dependent rect. 15 8
626 376.70 humidity 50.0 270 > th dose independent rect. 21 16
651 376.81 atmosphere 995.0 90 > th dose independent rect. 4 17
723 376.98 atmosphere 995.0 10 > th dose independent rect. 16 7
740 377.07 wind 9.0 270 < th dose independent rect. 2 18
784 377.24 humidity 50.0 270 > th dose dependent rect. 20 5
822 377.36 radiation 30.0 90 < th dose dependent rect. 15 18
828 377.39 humidity 50.0 270 > th dose independent rect. 10 15
877 377.59 radiation 10.0 30 > th dose independent rect. 17 23
932 377.75 atmosphere 995.0 270 > th dose dependent rect. 6 8
948 377.83 humidity 50.0 270 > th dose dependent rect. 19 7
970 377.92 temperature 10.0 270 > th dose dependent rect. 15 15
975 377.95 radiation 40.0 270 < th dose independent rect. 1 19
999 378.07 radiation 10.0 10 > th dose independent rect. 10 21