BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0561300 Os07g0561300|AK072982
         (168 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21510.1  | chr4:11446193-11447025 REVERSE LENGTH=226           67   3e-12
AT4G05010.1  | chr4:2567474-2568162 FORWARD LENGTH=165             59   9e-10
AT4G35930.1  | chr4:17019482-17020744 FORWARD LENGTH=322           54   3e-08
AT1G61340.2  | chr1:22628526-22629741 FORWARD LENGTH=232           53   6e-08

>AT4G21510.1 | chr4:11446193-11447025 REVERSE LENGTH=226
          Length = 225

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 65  SLLESLPQDVLIKVLCKVNHSDLRPLLLVSKQVSEATVVAREQHFAFATPSSKAALR 121
           S LE LPQD+LI+V+C V+H DL+ L LVSK + EA++VA+  HFA+ TP    A R
Sbjct: 122 SRLECLPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTPKKTRAFR 178



>AT4G05010.1 | chr4:2567474-2568162 FORWARD LENGTH=165
          Length = 164

 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 65  SLLESLPQDVLIKVLCKVNHSDLRPLLLVSKQVSEATVVAREQHFAFATPSSKAALR 121
           SLLE+L QD+LI+VLC V+H DL  L  VSK + +A + A++ HF ++TP  +   R
Sbjct: 62  SLLETLHQDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFR 118



>AT4G35930.1 | chr4:17019482-17020744 FORWARD LENGTH=322
          Length = 321

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 37/50 (74%)

Query: 65  SLLESLPQDVLIKVLCKVNHSDLRPLLLVSKQVSEATVVAREQHFAFATP 114
           S LESLP D+L+K++C ++H  L+ +  VS+++  AT++AR+ HF + TP
Sbjct: 160 SQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFNYTTP 209



>AT1G61340.2 | chr1:22628526-22629741 FORWARD LENGTH=232
          Length = 231

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 32/41 (78%)

Query: 74  VLIKVLCKVNHSDLRPLLLVSKQVSEATVVAREQHFAFATP 114
           V+++++C V H DL+ L  VSK + EAT++A++ HFA++TP
Sbjct: 134 VIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTP 174



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.130    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,036,296
Number of extensions: 51525
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 4
Length of query: 168
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 77
Effective length of database: 8,611,713
Effective search space: 663101901
Effective search space used: 663101901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)