Os07g0558000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ABC-1 domain containing protein.
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Os07g0558000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ABC-1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.67 | 0.369 | 8.69 | -0.121 | 0.66 | -0.843 | 0.108 | 4.38 | -0.292 | 7.1 | 20.5 | 3946 | -- | -- |
| 74.83 | 0.406 | 8.86 | -1.41 | 0.685 | -1.19 | -0.403 | -- | -0.606 | 9.48 | 13.42 | 28910 | -- | -- |
| 61.7 | 0.366 | 8.69 | -0.12 | 0.661 | -0.84 | -- | 4.37 | -0.292 | 7.13 | 20.5 | 3963 | -- | -- |
| 74.37 | 0.402 | 8.82 | -0.873 | 0.667 | -0.951 | -- | -- | -0.42 | 7.29 | 12 | 22669 | -- | -- |
| 83.35 | 0.425 | 8.7 | -0.0308 | -- | -0.936 | -- | 4.62 | -0.249 | -- | 20.77 | 3506 | -- | -- |
| 88.4 | 0.441 | 8.89 | -1.65 | 0.676 | -- | -0.0441 | -- | -0.774 | 7.51 | -- | -- | -- | -- |
| 88.41 | 0.44 | 8.89 | -1.65 | 0.676 | -- | -- | -- | -0.774 | 7.49 | -- | -- | -- | -- |
| 97.59 | 0.46 | 8.83 | -0.758 | -- | -1 | -- | -- | -0.393 | -- | 11.11 | 23710 | -- | -- |
| 77.36 | 0.41 | 8.76 | -- | 0.689 | -1.48 | -- | -- | -0.126 | 7.17 | 10.56 | 41499 | -- | -- |
| 112.82 | 0.496 | 8.91 | -1.64 | -- | -- | -- | -- | -0.763 | -- | -- | -- | -- | -- |
| 160.34 | 0.592 | 8.85 | -- | 0.662 | -- | -- | -- | -0.59 | 7.66 | -- | -- | -- | -- |
| 100.68 | 0.467 | 8.77 | -- | -- | -1.46 | -- | -- | -0.15 | -- | 8.907 | 42435 | -- | -- |
| 183.92 | 0.633 | 8.87 | -- | -- | -- | -- | -- | -0.581 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.74 | radiation | 40 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 3 | 51.85 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 5 | 51.93 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 7 | 51.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 17 | 52.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 20 | 54.27 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 21 | 54.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 28 | 54.81 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 31 | 55.05 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 32 | 55.08 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 35 | 55.29 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 50 | 55.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 52 | 55.37 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 63 | 55.61 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 76 | 55.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 84 | 55.85 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 90 | 55.92 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 95 | 55.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 148 | 56.33 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 176 | 56.48 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 225 | 56.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 247 | 56.90 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 250 | 56.92 | temperature | 15 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 253 | 56.94 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 260 | 56.96 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 284 | 57.07 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 446 | 57.59 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 460 | 57.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 516 | 57.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 530 | 57.82 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 588 | 57.96 | temperature | 15 | 43200 | < th | dose independent | sin | 10 | NA |
| 614 | 58.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 619 | 58.01 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 648 | 58.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 654 | 58.03 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 699 | 58.10 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 725 | 58.14 | temperature | 15 | 43200 | > th | dose independent | sin | 11 | NA |
| 736 | 58.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 872 | 58.27 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 944 | 58.33 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 975 | 58.36 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 2 |