FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0557400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Delayed-early response protein/equilibrative nucleoside transporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0268) R2 : 0.0302
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.213 (0.0564) R2dN8 : 0.0391 R2N8 : 0.0302
σ : 0.505
deviance : 117
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.68 0.497 3 0.341 0.183 -0.253 1.65 -1.58 0.242 0.507 2.705 94 -- --
113 0.495 3 0.271 0.306 -0.367 -0.091 -- 0.236 0.491 6.881 103 -- --
112.77 0.495 3 0.251 0.215 -0.289 -- -0.217 0.225 0.807 6.254 92 -- --
112.96 0.495 3 0.269 0.229 -0.304 -- -- 0.226 0.499 6.882 99 -- --
113.18 0.495 3 0.255 -- -0.124 -- -0.206 0.225 -- 6.838 86 -- --
114.16 0.501 2.99 0.268 0.12 -- 0.11 -- 0.244 12.9 -- -- -- --
114.21 0.5 2.99 0.272 0.12 -- -- -- 0.245 13 -- -- -- --
113.42 0.496 2.99 0.273 -- -0.133 -- -- 0.237 -- 7.753 99 -- --
114.85 0.499 3.01 -- 0.247 -0.316 -- -- 0.196 0.608 6.275 102 -- --
115.11 0.501 2.99 0.268 -- -- -- -- 0.243 -- -- -- -- --
116.17 0.504 3 -- 0.116 -- -- -- 0.215 12.9 -- -- -- --
115.38 0.5 3 -- -- -0.13 -- -- 0.207 -- 6.704 99 -- --
117 0.505 3 -- -- -- -- -- 0.213 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 104.64 wind 1.0 10 < th dose independent rect. 12 2
3 104.64 wind 1.0 10 < th dose dependent rect. 12 2
15 104.70 wind 1.0 90 < th dose dependent rect. 13 2
23 104.74 wind 1.0 90 < th dose independent rect. 12 3
70 104.87 wind 1.0 90 < th dose independent rect. 6 9
94 104.96 wind 1.0 90 < th dose independent rect. 6 12
121 105.46 wind 1.0 10 < th dose dependent rect. 8 7
188 106.13 wind 1.0 10 < th dose independent rect. 8 7
237 106.40 wind 1.0 90 < th dose dependent rect. 6 9
249 106.48 wind 1.0 90 < th dose dependent rect. 6 12
261 106.65 wind 1.0 90 < th dose independent sin 22 NA
356 107.25 wind 1.0 30 < th dose dependent sin 22 NA
370 107.42 temperature 25.0 30 > th dose dependent rect. 6 1
372 107.47 wind 1.0 90 > th dose independent rect. 9 12
397 107.78 atmosphere 1010.0 30 < th dose independent rect. 6 1
404 107.89 radiation 10.0 30 < th dose independent rect. 6 1
406 107.98 wind 1.0 90 > th dose independent sin 23 NA
420 108.18 temperature 25.0 30 > th dose dependent rect. 4 3
462 108.56 atmosphere 1010.0 30 < th dose dependent rect. 6 1
517 108.95 wind 1.0 10 > th dose independent rect. 9 12
559 109.31 wind 1.0 30 > th dose dependent rect. 6 1
560 109.32 wind 1.0 30 > th dose independent rect. 20 1
561 109.32 wind 9.0 30 < th dose independent rect. 20 1
562 109.32 temperature 10.0 30 > th dose independent rect. 20 1
564 109.32 temperature 30.0 30 < th dose independent rect. 20 1
565 109.32 humidity 50.0 30 > th dose independent rect. 20 1
568 109.32 atmosphere 995.0 30 > th dose independent rect. 20 1
569 109.32 atmosphere 1010.0 30 < th dose independent rect. 20 1
571 109.32 radiation 1.0 30 < th dose independent rect. 20 1
576 109.32 precipitation 0.1 30 < th dose independent rect. 20 1
577 109.32 temperature 10.0 30 > th dose independent rect. 21 23
578 109.32 temperature 10.0 30 > th dose dependent rect. 20 1
579 109.32 radiation 1.0 30 < th dose dependent rect. 20 1
584 109.32 precipitation 0.1 30 < th dose dependent rect. 20 1
585 109.33 wind 5.0 30 < th dose independent rect. 20 1
587 109.33 atmosphere 1015.0 30 < th dose dependent rect. 20 1
593 109.35 humidity 90.0 30 < th dose independent rect. 20 1
595 109.35 wind 9.0 30 < th dose dependent rect. 20 1
596 109.36 wind 1.0 30 > th dose dependent rect. 20 1
597 109.36 atmosphere 995.0 30 > th dose dependent rect. 20 1
601 109.37 humidity 50.0 30 > th dose dependent rect. 20 1
602 109.37 humidity 90.0 30 < th dose dependent rect. 20 1
627 109.49 temperature 10.0 1440 > th dose independent rect. 21 1
630 109.49 temperature 30.0 1440 < th dose independent rect. 21 1
634 109.49 humidity 50.0 1440 > th dose independent rect. 21 1
640 109.49 atmosphere 995.0 1440 > th dose independent rect. 21 1
641 109.49 radiation 1.0 1440 < th dose independent rect. 21 1
661 109.49 temperature 10.0 1440 > th dose independent rect. 22 23
669 109.50 radiation 30.0 1440 < th dose dependent rect. 21 1
684 109.64 temperature 30.0 30 < th dose dependent rect. 20 1
685 109.64 humidity 90.0 30 < th dose dependent rect. 6 1
698 109.71 atmosphere 1000.0 30 > th dose independent rect. 2 1
703 109.73 wind 5.0 30 < th dose independent rect. 2 1
707 109.73 temperature 10.0 30 > th dose independent rect. 2 1
709 109.73 temperature 30.0 30 < th dose independent rect. 2 1
710 109.73 humidity 50.0 30 > th dose independent rect. 2 1
714 109.73 atmosphere 1010.0 30 < th dose independent rect. 2 1
716 109.73 radiation 1.0 30 < th dose independent rect. 2 1
721 109.73 precipitation 0.1 30 < th dose independent rect. 2 1
724 109.73 temperature 10.0 30 > th dose independent rect. 3 23
725 109.73 temperature 10.0 30 > th dose dependent rect. 2 1
726 109.73 atmosphere 995.0 30 > th dose dependent rect. 2 1
728 109.73 radiation 1.0 30 < th dose dependent rect. 2 1
733 109.73 precipitation 0.1 30 < th dose dependent rect. 2 1
739 109.74 humidity 50.0 30 > th dose dependent rect. 2 1
742 109.75 wind 7.0 30 < th dose dependent rect. 2 1
781 109.81 atmosphere 1015.0 30 < th dose dependent rect. 2 1
790 109.85 temperature 30.0 30 < th dose dependent rect. 2 1
792 109.86 wind 1.0 30 > th dose independent rect. 2 1
829 110.06 radiation 1.0 10 > th dose dependent rect. 6 1
838 110.11 radiation 1.0 43200 < th dose dependent rect. 3 1
842 110.14 wind 3.0 30 > th dose independent rect. 6 1
891 110.22 temperature 25.0 30 > th dose independent rect. 6 1
908 110.31 radiation 20.0 30 < th dose dependent rect. 6 1
920 110.33 wind 1.0 90 < th dose independent rect. 6 1
958 110.60 wind 3.0 90 < th dose dependent rect. 6 1
961 110.63 radiation 1.0 90 > th dose independent rect. 6 1
985 110.78 atmosphere 1010.0 10 < th dose independent rect. 6 3
986 110.78 atmosphere 1000.0 90 > th dose dependent rect. 6 1
992 110.82 wind 9.0 30 < th dose independent rect. 7 23
998 110.84 wind 9.0 1440 < th dose independent rect. 7 1
1000 110.84 temperature 10.0 1440 > th dose independent rect. 7 1