Os07g0554200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os07g0554200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.98 | 0.472 | 4.67 | 1.6 | 0.564 | 1.2 | -0.191 | -1.37 | 0.391 | 8.92 | 23.4 | 780 | -- | -- |
| 102.89 | 0.472 | 4.7 | 1.41 | 0.553 | 1.43 | -0.458 | -- | 0.336 | 8.92 | 22.93 | 774 | -- | -- |
| 101.09 | 0.468 | 4.67 | 1.6 | 0.565 | 1.18 | -- | -1.47 | 0.393 | 8.87 | 23.45 | 780 | -- | -- |
| 103.66 | 0.474 | 4.7 | 1.41 | 0.551 | 1.47 | -- | -- | 0.345 | 8.84 | 22.82 | 777 | -- | -- |
| 117.66 | 0.505 | 4.65 | 1.8 | -- | 1.37 | -- | -1.85 | 0.53 | -- | 26.91 | 730 | -- | -- |
| 128.83 | 0.532 | 4.75 | 1.04 | 0.691 | -- | -0.589 | -- | 0.12 | 9.33 | -- | -- | -- | -- |
| 130.07 | 0.534 | 4.75 | 1.02 | 0.695 | -- | -- | -- | 0.119 | 9.23 | -- | -- | -- | -- |
| 120.12 | 0.51 | 4.71 | 1.47 | -- | 1.69 | -- | -- | 0.392 | -- | 23 | 749 | -- | -- |
| 149.03 | 0.569 | 4.75 | -- | 0.613 | 0.756 | -- | -- | 0.117 | 8.97 | 23.18 | 739 | -- | -- |
| 158.15 | 0.588 | 4.77 | 1.02 | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
| 157.63 | 0.587 | 4.77 | -- | 0.696 | -- | -- | -- | 0.00509 | 9.12 | -- | -- | -- | -- |
| 169.87 | 0.607 | 4.76 | -- | -- | 1.01 | -- | -- | 0.146 | -- | 23.21 | 716 | -- | -- |
| 185.59 | 0.636 | 4.79 | -- | -- | -- | -- | -- | 0.00908 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.51 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 7 | 96.28 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 10 | 96.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 13 |
| 11 | 96.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 11 |
| 19 | 96.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 45 | 97.48 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 54 | 97.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 146 | 98.89 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 169 | 99.10 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 188 | 99.37 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 16 |
| 191 | 99.39 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 201 | 99.47 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 233 | 99.77 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 12 |
| 234 | 99.77 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 245 | 99.86 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 274 | 100.03 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 339 | 100.38 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 15 |
| 351 | 100.44 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 389 | 100.65 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 485 | 101.17 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 561 | 101.55 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 820 | 102.75 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 872 | 103.00 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 21 |
| 904 | 103.13 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 22 |
| 939 | 103.36 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |