Os07g0548900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0548900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.36 | 0.217 | 11.8 | 1.38 | 0.531 | -0.355 | -0.509 | 1.34 | 0.615 | 17.6 | 16.4 | 1674 | -- | -- |
| 21.99 | 0.218 | 11.8 | 1.28 | 0.51 | -0.447 | -0.438 | -- | 0.63 | 17.7 | 13.82 | 18511 | -- | -- |
| 21.95 | 0.218 | 11.8 | 1.39 | 0.517 | -0.35 | -- | 1.34 | 0.612 | 17.5 | 16.34 | 1563 | -- | -- |
| 22.6 | 0.221 | 11.8 | 1.31 | 0.509 | -0.47 | -- | -- | 0.646 | 17.6 | 12.53 | 18522 | -- | -- |
| 35.44 | 0.277 | 11.8 | 1.36 | -- | -0.375 | -- | 1.05 | 0.593 | -- | 15.92 | 2714 | -- | -- |
| 25.09 | 0.235 | 11.9 | 0.948 | 0.521 | -- | -0.504 | -- | 0.462 | 17.6 | -- | -- | -- | -- |
| 25.7 | 0.237 | 11.9 | 0.951 | 0.518 | -- | -- | -- | 0.46 | 17.5 | -- | -- | -- | -- |
| 36.16 | 0.28 | 11.8 | 1.3 | -- | -0.484 | -- | -- | 0.634 | -- | 8.508 | 18553 | -- | -- |
| 36.51 | 0.281 | 11.9 | -- | 0.531 | 0.555 | -- | -- | 0.181 | 17.4 | 15.3 | 47520 | -- | -- |
| 39.63 | 0.294 | 11.9 | 0.933 | -- | -- | -- | -- | 0.447 | -- | -- | -- | -- | -- |
| 49.51 | 0.329 | 11.9 | -- | 0.502 | -- | -- | -- | 0.354 | 17.6 | -- | -- | -- | -- |
| 50.46 | 0.331 | 11.9 | -- | -- | 0.542 | -- | -- | 0.17 | -- | 15.37 | 47520 | -- | -- |
| 62.61 | 0.369 | 11.9 | -- | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.68 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 9 |
| 2 | 19.80 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 3 | 19.87 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 5 | 19.91 | humidity | 80 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 6 | 19.91 | humidity | 80 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 13 | 19.92 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 14 | 19.93 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 19 | 19.95 | humidity | 80 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 20 | 19.95 | humidity | 80 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 22 | 19.95 | humidity | 70 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 33 | 19.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 34 | 19.97 | humidity | 80 | 14400 | > th | dose independent | sin | 22 | NA |
| 38 | 19.97 | humidity | 70 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 49 | 19.99 | humidity | 80 | 14400 | > th | dose independent | rect. | 9 | 14 |
| 64 | 20.01 | humidity | 80 | 14400 | < th | dose independent | sin | 23 | NA |
| 140 | 20.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 150 | 20.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 161 | 20.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 183 | 20.12 | humidity | 80 | 14400 | > th | dose dependent | rect. | 7 | 18 |
| 210 | 20.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 222 | 20.15 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 227 | 20.15 | humidity | 70 | 14400 | > th | dose dependent | sin | 0 | NA |
| 235 | 20.16 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 299 | 20.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 302 | 20.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 357 | 20.21 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 9 |
| 364 | 20.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 411 | 20.22 | humidity | 70 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 476 | 20.24 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 502 | 20.25 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 11 |
| 566 | 20.26 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 22 |
| 628 | 20.28 | humidity | 80 | 14400 | > th | dose dependent | no | NA | NA |
| 648 | 20.28 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 675 | 20.29 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 691 | 20.29 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 736 | 20.31 | humidity | 70 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 738 | 20.31 | humidity | 70 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 769 | 20.32 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 802 | 20.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 837 | 20.34 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 8 | 16 |
| 877 | 20.35 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 996 | 20.39 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 15 |