BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0548900 Os07g0548900|J075093E01
(249 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53970.1 | chr3:19985208-19987132 FORWARD LENGTH=303 115 2e-26
AT1G48530.1 | chr1:17943508-17944220 REVERSE LENGTH=176 66 2e-11
>AT3G53970.1 | chr3:19985208-19987132 FORWARD LENGTH=303
Length = 302
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 121/281 (43%), Gaps = 60/281 (21%)
Query: 18 FRGAHDGVXXXXXXXXXXXGYSLCAVGPAALTDPP--PSGEEEVGIDGWNSMDNCYAFLY 75
FR HD V GY L A G A D S + +VGI+GWN + YAF+Y
Sbjct: 18 FRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQNDVGIEGWNEFEGEYAFVY 77
Query: 76 IKEERGKKKRVLVKCLVIGDVLAIDVLDLESQNKGPYNIQINVKDFFSEEQPKNYGNMYK 135
++G KK +LVKCL + D L +D + P +++I V D+ E +Y +K
Sbjct: 78 ANPKKGSKK-ILVKCLAMDDKLLVDA--IADGGAEPAHLEIKVGDYAEESNEGDYSAQFK 134
Query: 136 NFAGLIETMNSNALSKLDEKDAGAAKNPEVETSSS----------------IH--SLVYP 177
N L+ + S + KLD K A + + ++ IH +V P
Sbjct: 135 NLDKLVTDLQSEIIDKLDGKPKPVASRAQSSSETNEEPRYYDDTPNPLGPQIHPSGVVVP 194
Query: 178 PI-APLGHDDAFPGPGAGFYPHR-----------------------SVPPG--------- 204
PI G+ D FPGPGAG YP R S PG
Sbjct: 195 PIPGNGGYSDLFPGPGAGMYPGRGGFGDGSMLVGPTDPRFFPFGDGSDRPGFMGPPHPGM 254
Query: 205 ----GRYDPIGPPDVPGFEPSRFVRRPRPPAGTTHPDLEFF 241
R+DP GPP VPGFEP RF R+P G HPDLE F
Sbjct: 255 PPPGARFDPYGPPGVPGFEPGRFTRQPPRGPGGGHPDLEHF 295
>AT1G48530.1 | chr1:17943508-17944220 REVERSE LENGTH=176
Length = 175
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 18 FRGAHDGVXXXXXXXXXXXGYSLCAVG-PAALTDPPPSGEEE--VGIDGWNSMDNCYAFL 74
FR +D + G+ L + G PA D S + VGI+GWN D YAF+
Sbjct: 29 FRNKNDKIAFVVHASLAVSGFILTSTGRPAFAHDALSSSTTQCLVGIEGWNEFDEEYAFV 88
Query: 75 YIKEERGKKKRVLVKCLVIGDVLAIDVLDLESQNKGPYNIQINVKDFFSEE-QPKNYGNM 133
Y + KR LVKCL + D L +D + + + G ++QI V ++ E + +Y
Sbjct: 89 Y----KCPVKRYLVKCLAMNDKLLVDAIAEDGKEFG--HLQIEVGNYIDESGEEGDYDTQ 142
Query: 134 YKNFAGLIETMNSNALSKLD 153
+KNF L+ + S L KL+
Sbjct: 143 FKNFDKLVTELKSEILCKLN 162
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,325,399
Number of extensions: 323743
Number of successful extensions: 925
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 921
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,474,633
Effective search space: 1296618849
Effective search space used: 1296618849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)